RNA id: XM_034298071.1



Basic Information


Item Value
RNA id XM_034298071.1
length 3826
RNA type mRNA
GC content 0.43
exon number 17
gene id crot
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5317198 ~ 5331214 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TGAGCTGTTTACAGGCTACTGGGTGAAAGGTCGCGGGATCAGAACCCGGTTCGGAGTCAGATCACATAAAGATGCAGTAACACTGCACTGCGTCTATCCTGTAATAACAACACTAACATCTGGACTTCATCACCAGCTGTTTGCTTCTTGCTTCTTGATTATATGGTGTCTTTTCTCCTTGCAGATCGTTACATCTTACTTTGAGGTATAATAATGGATAATCAGGCATTTGAATCTGTGGCCGAGCGAACTTTCCAGTATCAGTCCACGCTGCCACCGCTGCCCGTGCCGTCCCTGGAGGAAAGTCTCCACAAATACCTGGACGCAGtgAAGCCATTTGCCTCTGAGCATGAGTTTCGCAACACAGCAGCCATCGTGAAGCGCTTTGCTGAGGGAATCGGGCAGCATCTTCACCAACGACTCCTACAGCGAGCCAAGAGCAGGCGCAACTGGCTGGAAGAATGGTGGTTGGACACGGCGTATTTGGAAGTTCGAATCCCGTCTCAGCTCTATGTGAACTTCGGAGGACCAGGGCCGTACCTGGAGCACTGCTGGCCGGCGTGTGAGGGGACGCAGTTGGAGAGGACCAGTCTGGCGACGTGGCTCACGCTTCAGTACTGGGACCTCATCCGCACGGAGAAGTTGGCCGTCCATAAAGCAGGAAACATGGCCTTTGACATGGATCAGTTCCGCATGCTCTTCTGTACCTGCAAAGTACCTGGAATTAACAAGGACAGCATTGTCAACTACTTcaagacagAAAGCGAAGGCCCGTGTCCTTCTCACCTCATAGTGATGTGTCGTGGCAGAATCTTCACTTTCGATGCTCTCTGTGATGGACGCATCCTCACTCCTCCTGAATTACTGagGCAGCTGACCTACATTAAACAGAGCTGTGATGGAGAGGTCTGGGGTGATGGAGTGGCCGCTTTGACCAGTGAAGAGAGGACGAAATGGGCTAAGGCACGGGAGCATCTGATCTCAATCGATCCTGTCAATAAGAACATACTGGAGACCATCCAAAGCTCGTTGTTTGTTCTCACACTGGACGATGCAAAGCCATATTCCACCCCGGAGAATTACACCTCgatgACCCTGTTGGCTCTGACAGGAGACCCCACTGTCCGCTGGGGTGATAAATCCTACAACTTCATCAGCTTTGCCGACGGCACCTTCGCCTCAAACTGTGATCACGCACCCTATGATGCCATGGTCTTGGTGTCAATGTGTTACTACATGGACCAAAAAGTGAAGGCCGTCAGTGGAAAATGGAAGGGTACAGAAGTGGTACGAGACCTTCCTGATCCAGAAGAGCTTGTGTTCACTGTAGATGAAAAAGTCAGGAGAGACATTACACTGGCAAAAGAGCAGTACAGCAAAAGTACTCAGGATCTGCAGGTCATCTGCTATGCCTTCACCTCTTTTGGGAAAGCAGCGATCAAGAAGAAGAATCTTCACCCGGACACATTCGTTCAGCTGGCCATGCAGTTAGCGTACTACAGGCAACATGGAAAACCTGGGAGTTGTTATGAGACCGCCACCACACGCCGTTTCTATCATGGCCGCACAGAGACTATGAGGCCGTGCACAGTCGAAGCCCTACACTGGTGCAAAGTCATGCTGAATCCCTCGGCAACTACTGAAGAGAAAAGACAAGCGCTGCTTCGTGCtttcaacaaacacaacaaactgaTGGATGAGGCTCAGAAAGGAAAAGGCTTTGACCGGCATCTTTTGGGCCTGTACCTGATCGCCAAGGAGGAGGGACTTCCAGTTCCTGAGCTTTACTCAGACCCTCTCTACTCTAAGAGCGGCGGAGGAGGGAATTTCATCCTTTCCTCCAGCCTTGTTGGCTACACGACTGTTCTGGGGGCCGTCTCTCCCATGGTGCACCACGGCTATGGCTTTTTCTACCGCATCCGTGACGATAGGATTGTTGCTTCCTGTACAGCCTGGAAATCCTGCCCGGAGACAGACGCTGAGACGTTCTTTCAGAACTTGTGCACCTCCTTCCATGATATCATGCGGGTCACGACCCTGTCTCACCTGTAGAGTAAAGCtgtctgggaaatggagtccttTTAGTACGGTTTCAACTTCATGTAGACAAGCTAGCAGTGATCAAAGTGCCTTTAATTGTATTAAACCTCAGGCTTTCACGCAATACAATACGATTTAGAGTAAATGAGACGATATCTGAATCTGCTACCATATGATATGATTCAATTTAGCAGCCTTTGATcaaactttgttcagaatctgttGTAGGCCTACTGTTAATTCGTGAAtgataattacataaaatagGACTATTTTGAAAGTATCGTAGTTATGGGAAAGTCATCTAGATAGACAATTAAATTGTTTAcgcatcagtttaaaaatatgaattatttttacacagcAGTTGTTTGTCCTTCAATAATAATCGATTGTGATTGTTGTATCAATTAATTTCGATCATTGCTTTTTAATTCAACGCATCAATCCAAAACATCAGATAGTTTCACCCCTAGTAATCAacgaagaataaaaaaaaaattaacagaatATTCGTGACAGGTTTTGTTTGACCAAAGGCACTTGTAATAATCTTTCATATTGTTGCCTTTAGGTGTTTTACACCTCACCGCTTGCTGTTGAAGAAAAAACTGCGATGAGCACTATGTGCAAGTCTCATAAACTAAGGTATTATTCAGATTTTGTTTagtctttcattaaaaaattctaTCTTTTAAATTAGGAATTTTTGTTTAGCATTGCGTTGGTACTCTTTAATAAATCTCTGCATATGTTACAGGTCAAGAAGATGTAATATGTAGAGCTTTAAATGGAACAGTTTAAGTGCTCTTACTGTAGTTTACCAACATAAATGAGAGAGTAATGTAGAGAGGATTTAGTACATCAGTGGAATTGcttaaataaaaagctgtatTGAGTAAAAGCAATTAGTTCTGCGTTGAAATGAATTCTGAATCACTGTAAATTCAGTTGATGGCAACGTCACTTACCGTTGTTAGGATTTACAACATAAATGTAGTTGATCGGTCTTCGACCTTAATTAGGGCTATACAAGTTTTccaacttgaaaaaaaaaaaaaaaaaaaaaaaacagaagatggACGAGACAgctaaaaatttttttagacAATAAGAAAATAGGGAGGCAAAAGTCCAATGTGAACACTACTTAATAATCCCCTTTATTCTATAGACCACAGAGCCCACAGTCCCTCCCATTTGGTTTCTGTTGGCTCACActactgaagctcttgatttCACAGCAATAAattcagcacaaaatgaaattaacTGCTACCATGAGCACACGCCTGTTTCACGTCCTGTATCTTTTCCCCTTTAGTGAAAAAATCAGAACTGCTTCGGTTAAAGTGTAAATATTGCCCTGTCTGGATTTGGTGGTTAATTATCTAATGTGTTCATGTAAAcagtgctgtctctctctgtgtatgtgaaaTGCGCAAAGAACCAGATGGTTCAGTTCATTACCTGGTATTACCTTATGGATTTAAACTTTATCCAAAGCTGCTTTAGAGAAAGTGATGAGGATTACACAGAAAATGCAACACAACATTGATATATATTGAATGTATAGAAAACATGATAAACCCCCATGCAAAGATCAATGCAAGTGAACAGAAACAATGCAACCATTcttacttcatttcatttctgtaattaGTTTTCTGTTATATactgttttgctcattttaattttaatctcaAGTGAaatgttcttctttcttctgtGCTATATCACTGTATTTTGAGTATCAATCAAGAGtaaattctttatattttgtta

Function


GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K05940 CROT; carnitine O-octanoyltransferase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU387473 lncRNA upstream 2609 5311231 ~ 5314589 (+) False acbd7
TU386838 lncRNA upstream 287408 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 327882 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 333518 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 392562 4924178 ~ 4924636 (+) True G326440
TU387573 lncRNA downstream 210144 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 274656 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 501779 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 511005 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 1317066 6648280 ~ 6708779 (+) True G328024
XM_026924204.2 mRNA upstream 2584 5311209 ~ 5314614 (+) True acbd7
XM_026924202.2 mRNA upstream 10059 5298302 ~ 5307139 (+) True nmt2
XM_026924452.2 mRNA upstream 22455 5260438 ~ 5294743 (+) True fam171a1
XM_026924393.2 mRNA upstream 58639 5254686 ~ 5258559 (+) True LOC113532775
XM_026924395.2 mRNA upstream 62646 5248913 ~ 5254552 (+) False LOC113532776
XM_026923889.2 mRNA downstream 24968 5356182 ~ 5386626 (+) False rundc3b
XM_026923887.2 mRNA downstream 24970 5356184 ~ 5386626 (+) True rundc3b
XM_026923890.2 mRNA downstream 24970 5356184 ~ 5386626 (+) False rundc3b
XM_026923888.2 mRNA downstream 24973 5356187 ~ 5386626 (+) False rundc3b
XM_026924768.2 mRNA downstream 69719 5400933 ~ 5411050 (+) False dbf4
TU386814 other upstream 387044 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 393517 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1303660 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2747459 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 3102937 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 1054 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2570578 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3056973 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3283859 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3437531 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile