RNA id: XM_034298075.1


Basic Information

Item Value
RNA id XM_034298075.1
length 4294
RNA type mRNA
GC content 0.47
exon number 2
gene id gpr12
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17496077 ~ 17503703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcggcACCgaccgccgccgccgccgcggGGGACATGGACACGCAACAAGGTCGCGAGCGCGTCTGAATCGCGCGTCTCGACCTCCAAGATTACAAGACGGGAGGCACAATGAGCGAGCAGGTGTCAGTCACCCCGAGCTGGCTGACCCCTGACCCCAGCTGGGTCAGCAGCGGTGGTGGGAGCACCGAGAACCTGACAGCTGGAACGCCTCCTCCACCTGCCATTTTACCCCCGGAGTCTTCTGCCGAGCTGCTGGTGAATCCGTGGGATATTGTGCTGTGCACGTCGGGCACCCTGATAGCCTGCGAGAACGCCCTGGTGGTCCTGGTGATCTGGCAAAACCCGGCTCTGCGTGCTCCCATGTTCCTGCTGATTGGTAGCCTGGCGCTGGCTGACCTGCTAGCCGGTGTGGGTCTGGTGCTCCACTTCGCCTTTGCCTACCTGCTGCGCTCGGACGCGGCCCAGCTGCTCACGATCGGCCTGGTGGTGGCCTCGttctctgcctctgtcttcAGCTTGCTGGCCATCACCATCGATCGCTACCTGTCGCTGTATTACGCGCTCACGTACAACTCAGAGCGCACAGCTGCCTTCACCTACACCATGCTGGTGCTGCTGTGGGGGGCGTCCCTGTGCCTTGGTCTGCTGCCCGTCACGGGGGTAAACTGCCTGAGTCAGGAGGACGCCTGCAGCGTGGTACGGCCGCTCACAAAGAACAATGTTGCTGTTCTGTCCGTGTCCTTCTTGCTGCTCTTCGGGCTCATGCTGCAGCTCTATGTGCAAATCTGCAAGATTGTAATGCGGCATGCGCACCAGATCGCCGTGCAGCACCACTTCCTGGCTGCCACACCGCACTACGTCACGACACGCAAAGGCGTCTCCACGCTCGCCATCATCCTGGGAACGTTTGCCGCCTGCTGGATGCCTTTCACCGTCTACTCGCTTATTGCTGACTACACCTACCCACCGCTGTACACCTACGCCACGCTGGTTCCCGCCACCTACAACTCCATCATCAACCCCGTCATCTACGCCTTCCGCAACCAGGAGATCCAGAAGGCGCTTTGGATGGTGTGCTGCGGCTGCATCCCGGCCAGCATGGCACAGCGGGCACGGACGCCCAGCGACGTCTAACGTACATGTCTCCCTGGGATTGCATGCCGTTGTGAGACAAGGGGACATACGTGTGGCCCTTCTTTTACGTCTTCCCCTTATTGTGATGTAACTTCGACCACTGCCACAtggccttttttccccctcacccTGGTGCCACCAAACTGCCACCAAAGCCAACCTTTTCACGGCATTTATCTGTACATAAAATGTAGATAAACTTGCTGTTGTAAACAATGAGTGCTCCTTTGAAAGGCCTCAGCGGCATCCCTCAGTGAGGGAGGAGGCTGAGATGAGGGGCCTCGCTCTTCTCTGCTGCATTCTGAACGTGTGCTGAAAACCAAGCAGCCATGGGGAGCTAAAAATAGCCGCAGCGATCAGTGATCCACGCCTCGCGTCATCCGCTGGAGAGAAAAGCAGCGCCAATCTTGCTTTATCCTGCTTGCTATTTTTGTGCGGTTTTATTTTTTTCGTTTTGCTTTAAAGACCCTGACCCAAATGTGCCCAAATGTACAATGTCCTCCAAATCAGAAGACCATGAAGAGCTAACAAGAATCCCCTGAATAAAACCCGTTGATGCCTTTATTTCCATTTCTTGCCACAGGATGACTAGCATTGGTTTCCTCCTGCATAAAGAGCGGAGGCTGGAATGAACTGGGCTGGATGTGAAGTGCATGGATATTTAAGCAGTTGTGTATGAATGAATAGGGGGTTCACTTTGAATGAATGTACGCTTTAgtgacatttgtttaattcagtGATGTTGTCTCTGATTTAAAAAGTCCTTTGTTTTTGCCCTTCATACTTTACTTCCAGCTGAGCACCAGTCTAAATAATGGCCAAtaggaaaatgaacaaattcatttatattaattgGTAATTACTTGAAGTGTTTTAATTGAAATACAGGGCTACTtaacaaaatacagaaataaccTAATCACCTTTATCACCTGAATGTGAAGTATTCCCTGGAAAGCAAGCGGCTGATGAGGAAGATAATGAGAGCAAACACAGATGCTGCTTTATAgacaaaaaccaaacaaacaccaGGTTAGTTAGTTAGCACCGCTGCTCTCCTCTGACGCCATCGATTTTGATGATAAGGGAGGTTATGAGCTTGCGGAGTTTAGCTGATGGTGACTTTACAAGAAAGAGCTTGGCTAAGCCGCTGTTCCTCCAAGAAATAATGAAGGGGGGCAAATTGCACAAATTGTAGTTTTGTGTCTAAGTTCtgctttttttaagttttgcaATCAAGCTATAAGGCTCAGTATCCACAAAACCACTGAGGAACTTTTTCCTAAGAATGTATGGTTCCTGTTTTAATCTATCTCAATTTGAAAagtaatattaatgttatttaaacacttttaatcTGAAGCAATTATTGTTATAAAGGCAAACGGTTCTCCGCCCAAAAAGGATTCCTCAAAGGCGATTTGTATGGTTAATGCATTTAGATCTTTAAAAGGGTTCTAGCTGGAACGTTTTATGGAAGGGAAACTGGTGTAGGGTTTTACAGTATCTCCCAGAAGGACAAGCTGTAGAACCTGTTATGGTTTTAGATGAAACTTTTTGGTTTAATGGAAGCTTATGACCATGAATAGCATCATGTATATACCCTGTAAAAACTTGGAGAAGCCTAAAGAATCTTTGGCTTGTTCTTCTGGGGGAACAAAGAACCTACAACaaattttactatttaattatAGGCACACACTGTATCTGAACCTGACACCAAATCTGCCACTCTTAAGGGTTCTCTGAGTTTTCCTACTAGGGGAACCCTAAAacaaagaacctttaactatCCAATGAAACTTTGAGAAACTTTTTCAGTACAATTTTGTTATTTAGTTGCAGGCATATTGTCTAAACCTGATACTAAATCTATCACTCTTAAGTATTCTTTGATTTGTCCCTCTGGGAAAACTGAAAGGTTCCTTGGTCATGAGTTGAGGTCAGTGGTCTTAAGGCCAAAGAAAGCTGAAGAACAAAGTTCTGGcagaatttttttcattaaaatgtcagAGTGTGAGCTGCTATGATGCTCGTccaaaagccaccaataggaggacggcatgGGATGAGACCACAGATACCGTATATATGATGGCGACAGCTACAGATACGGTATATATGATGGCTAAACATTAACAAatcatgctaatggacagaaaaagcTTGTTTTTATGCAAGGCTGTTTTGTGCTCGAGCTAGGATCACGCTGATTGATGACATAAACAGAACGTAGTAATTTCCTTTAATCACAGGATCAGTTTATACAATGTGACAACTCATAATCTTAAAAGGTCGATAAAATCACTCAGTCTAAAACCAGCTGGATTCACTGACAGTCGTGGGTGTTTAGAGGACCTTAACCATCCCAGGAACCATTGAGGAACCGGTTTTAAGAGGGTAGAAACCACATTTGCATGGTGCTAATGTGCTAATGCATATGTTTTGCCttatagctccagtgcaaaaataGCAAAATTTGAATGCTAAACTGCAGTGTTTTGCCTGTTTGACtacatttgtagaaaaaaaaattgtgcatatttcagttttcttcccAGAATCACATTATATTAATGCTTTAAAACTCCTGCTCTCAAATCTGTTTCAGCACTAAGGTCAGACTCCATGAGCAAGCAATAACCACATCTGAGTGTTTCACCAAAATGACAGCAATATTCCAGCAGCAATAACAGCTTCGTCCAGCAAATCGGAAATATCACCATATGATAATATGCCACTCCAAATGTCCCTGAGTGGAAATAAAGCAAGACCACTGCGGGTGACTTTTATTGTAAAACCCAAAGCATTATGAACGAAGCTGTATTTCCAAAATGTGAACCGGACACAATGATCTGTCCGAACCTTTGGCGCTACGACAGCAGTCGAACTGCCTATAACAGAATCGGGTCCTCCCCCTCAGCGTAACACGTTCATGCAGTTTGCATCTGCCGTCGTGAATCTCTGACCTGTAACGTGTGTCATGTCTCTGTATGATCGCATTTGTTGCATGGCGGCGTGTAcgtgcatgtatgtgtatgtcttcgtgtgtgtgtcatgctaAAAAGCCTGTCTCCCTGAAGGCATGCAGAACGGACGGAGGTGAGGTGGCAAACGTCTCCTGTGCGAATTCCCCAAAGATGTGTACGGGGTCAAAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04315 GPR12; G protein-coupled receptor 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395063 lncRNA upstream 49034 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 133002 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 309402 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 598222 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 605916 16888937 ~ 16890161 (+) True LOC113541357
TU395113 lncRNA downstream 36934 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 163933 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 166713 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 204019 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 237698 17741401 ~ 17745040 (+) False G333795
XM_026938072.2 mRNA upstream 3759 17483693 ~ 17492318 (+) True usp12a
XM_026937820.2 mRNA upstream 29625 17450723 ~ 17466452 (+) False lnx2a
XM_026937819.2 mRNA upstream 29625 17452164 ~ 17466452 (+) True lnx2a
XM_026938140.2 mRNA upstream 61252 17432046 ~ 17434825 (+) True urad
XM_026938141.2 mRNA upstream 61252 17432784 ~ 17434825 (+) False urad
XM_026938240.2 mRNA downstream 32241 17535944 ~ 17542387 (+) False rnf6
XM_034298078.1 mRNA downstream 32513 17536216 ~ 17542387 (+) True rnf6
XM_034298181.1 mRNA downstream 40120 17543823 ~ 17605193 (+) True atp8a2
XM_034298182.1 mRNA downstream 40121 17543824 ~ 17605193 (+) False atp8a2
XM_034298184.1 mRNA downstream 52789 17556492 ~ 17605193 (+) False atp8a2
TU394792 other upstream 194073 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 194380 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 196066 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 196066 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 201023 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 483059 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 811653 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 811655 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 811657 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 811980 18315683 ~ 18323295 (+) True mtfr1

Expression Profile