RNA id: XM_034298096.1


Basic Information

Item Value
RNA id XM_034298096.1
length 724
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC117595788
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17287140 ~ 17290895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATTATGAGTTGTATATATTCATGCCTCCATTTTATCTTCTGCAGTTTGGGACTCTTTACTGCTACAGTAATAATGGCTTTGTGTGGAGGGCTCGCCAAGGTGGAAGAGGCCACTGCTGAGGTGCAGCAAATCTGTGATAAGATGAAGCCTCATGCAGAGCAAAAAGCAGGAAGAAAGTTTCAAATCTTCACTGCTAAATCCTACAAGACACAGGTGGTAGCTGGAACGAACTATTTCATCAAGGTCCATGTGGGTGGCAATGACTATGTTCACCTGCGTATCTATAAGACGCTGCCACACGATGGAGAAAAACTGGCACTTCATGGAATACAGACACCCAAAGCCCATCAGGACCCCATCGAATACTTCTGAACATACACTCCATTAAGAAAGAGACACCATCGaaactgcactaacacacataaacaggaaCTGTATTTGAATTTGTATTCCATATGGAATGTCACTGGCTTAAAACTGAGTGACATTAATCACAACCTGTTTATTCCTTTTTACTTCATAAGCTGACAAGAAATGAGCTGCTTCTTCAATTAATAAAAAGGCAGTGATAAATATCAGTCATTTACAATCTCTCAATTCCTTTTAAAATTGATCGAACAAATGGAGTGGTGTTTGGTATTTGATGTGTTTATAATATGTCCATCTTGAAGAATGCAATACCTGTAATGAGATTAaaggtaaaaataaacattgacaCATGA

Function

GO: NA

KEGG:

id description
K13907 CSTA_B; cystatin-A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394762 lncRNA upstream 100465 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 389285 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 396979 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 397411 16888906 ~ 16889729 (+) False LOC113541357
TU394612 lncRNA upstream 457161 16772003 ~ 16829979 (+) True G333232
TU395018 lncRNA downstream 71976 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 155290 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 249742 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 376741 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 379521 17670416 ~ 17670625 (+) True G333791
XM_026938185.2 mRNA upstream 404 17285104 ~ 17286736 (+) True LOC113541296
XM_034298269.1 mRNA upstream 115542 17163000 ~ 17171598 (+) True sec22c
XM_026938204.2 mRNA upstream 115542 17163000 ~ 17171598 (+) False sec22c
XM_026937903.2 mRNA upstream 171364 17111768 ~ 17115776 (+) True klhl40b
XM_034297884.1 mRNA upstream 177367 17100164 ~ 17109773 (+) False hhatlb
XM_026938186.2 mRNA downstream 5678 17296573 ~ 17299390 (+) True LOC113541297
XM_026937860.2 mRNA downstream 19826 17310721 ~ 17315700 (+) True fam162a
XM_026938246.2 mRNA downstream 38939 17329834 ~ 17333509 (+) True si:ch211-161h7.8
XM_034298150.1 mRNA downstream 45297 17336192 ~ 17353309 (+) True drd3
XM_026938106.2 mRNA downstream 45297 17336192 ~ 17353309 (+) False drd3
TU394735 other upstream 177113 17107472 ~ 17110027 (+) False hhatlb
TU394736 other upstream 177113 17107472 ~ 17110027 (+) False hhatlb
TU393912 other upstream 1720477 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 2022553 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3901866 13385201 ~ 13385274 (+) True trnat-agu_17
TU394795 other downstream 1136 17292031 ~ 17301697 (+) False G333388
TU395491 other downstream 695867 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 1024461 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 1024463 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 1024465 18315360 ~ 18323295 (+) False mtfr1

Expression Profile