RNA id: XR_004576966.1


Basic Information

Item Value
RNA id XR_004576966.1
length 1589
RNA type misc_RNA
GC content 0.55
exon number 13
gene id psmc4
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 774289 ~ 806528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTTGTTTACCCTCATTAGCGTGACGTCTGCGCGTGACGTCACTCGACGTCAGATCCTGTATAATCCAACATGGAGGACGGCGGAGTGCTAGTGGAGAGAGCTCAGgacgATGTTCCAGCCATGCTGAGCTCACGGCCTCAGACCGGTTTGTCCTTTTTGGCCCCAGAGCCTGAGGATCTGGAGGATCTGTACAGCAGATATAagAAGCTGCAGCAGGAGCTGGAGTTTCTGGAGGTGCAGGAGGAGTACATTAAAGATGAGCAGAAGAACCTGAAGAAGGAGTTCCTCCACGCTCAGGAGGAGGTGAAGAGGATCCAGAGCATCCCGCTGGTCATCGGGCAGTTCCTGGAGGCCGTGGACCAGAACACGGCCATCGTGGGCTCCACTACGGggtcgAATTACTACGTGCGGATCCTGAGCACTATAGACCGAGAGCTGCTGAAGCCCAACGCCTCTGTGGCTCTGCACAAACACAGCAACGCTCTGGTGGACGTTCTGCCTCCGGAGGCCGACAGCAGCATCATGATGCTCACCTCcgATCAGAAGCCGGATGTGATGTACGCTGATATCGGAGGGATGGACATCCAGAAGCAGGAGGTGCGGGAGGCCGTGGAGCTTCCCCTCACACACTTTGAGCTCTATAAGCAGatTGGTATCGACCCCCCGAGAGGTGTGCTGATGTACGGACCCCCCGGCTGTGGGAAAACCATGCTGGCTAAAGCGGTGGCTCACCACACCACAGCGGCGTTTATCCGCGTCGTGGGCTCTGAGTTTGTTCAGAAATACCTGGGTGAAGGGCCGCGTATGGTCAGAGACGTGTTCCGATTGGCCAAAGAGAACGCACCTGCCATCATCTTCATCGACGAGATCGACGCCATCGCCACCAAGCGCTTCGACGCACAGACCGGAGctgaCAGAGAGGTGCAGAGGATCCTCCTGGAGCTGCTGAATCAGATGGACGGATTCGACCAGAACGTCAATGTGAAGgtgatcATGGCCACTAACAGGGCCGACACTCTGGACCCGGCTCTGCTGCGTCCTGGTCGTCTGGACCGTAAGATCGAGTTTCCTCTGCCGGACCGCAGACAGAAACGCCTCATCTTCTCCACCATCACCAGCAAGATGAACCTGTCTGAGGAGGTGGACCTGGAGGACTatgttgcTCGACCGGACAAGATCTCTGGAGCAGATATTAACTCCATCTGCCAGGAGgCTGGCATGCTGGCTGTGCGTGAAAACCGTTATATCGTCCTGGCCAAGGATTTCGAGAAGGCTTACAAGACGGTCATCAAGAAGGACGAGCAGGAGCACGAGTTCTACAAGTAGAGACGCCGTTTCGTCACATCGGCGTTAACGTagctgttttttctttattattttctgtgtttatttgtatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacggtgtttAACGCGAGTTTATTCAGCGacggAGACCTGTGATTGGCCAAGCCTGCGTCGCTAACGGCAACAGAACTGTAGTGACCGCTGAACTGTAGTGAAAGGAACTAG

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03063 PSMC4, RPT3; 26S proteasome regulatory subunit T3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 20846 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 20846 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 60488 713395 ~ 713801 (+) True G324197
TU384015 lncRNA upstream 139244 606086 ~ 635045 (+) False G324123
TU384216 lncRNA downstream 504383 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 523119 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 533000 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 534597 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 572018 1378546 ~ 1378940 (+) True G324328
XM_034297823.1 mRNA upstream 28769 719389 ~ 745520 (+) True gramd1a
XM_026911138.2 mRNA upstream 93919 674868 ~ 680370 (+) True LOC113524791
XM_026911162.2 mRNA upstream 110313 658481 ~ 663976 (+) True pycard
XM_026911161.2 mRNA upstream 110313 658481 ~ 663976 (+) False pycard
XM_026911136.2 mRNA upstream 116897 650918 ~ 657392 (+) True etsrp
XM_034298117.1 mRNA downstream 113 806641 ~ 816145 (+) True si:dkey-199f5.8
XM_034297824.1 mRNA downstream 25317 831845 ~ 843562 (+) True cep85
XM_034298120.1 mRNA downstream 51582 858110 ~ 893602 (+) False atp2c1
XM_034298121.1 mRNA downstream 59866 866394 ~ 893602 (+) True atp2c1
XM_034297868.1 mRNA downstream 97935 904463 ~ 906704 (+) True rpp25l
TU384116 other upstream 25814 745673 ~ 748475 (+) True G324206
TU384064 other upstream 164280 607612 ~ 610009 (+) False G324161
TU384003 other upstream 167375 606086 ~ 606914 (+) False G324123
TU384046 other upstream 216150 557415 ~ 558139 (+) True G324143
TU383992 other upstream 307664 454910 ~ 466625 (+) True G324120
XR_004576993.1 other downstream 150597 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 311740 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1335978 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1403694 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 1403694 2210222 ~ 2214261 (+) False LOC113533074

Expression Profile