RNA id: XM_034298117.1


Basic Information

Item Value
RNA id XM_034298117.1
length 1740
RNA type mRNA
GC content 0.56
exon number 6
gene id si:dkey-199f5.8
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 806641 ~ 816145 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATTTCCGATGTTCCCACCAGAGCAGGAAGTGATGTTATGAACCGGCGCCAGCGATGCACGCTCTCGCATGCGTCGGTCGCGTGTGTGAGCTCGCAGAGATCTAAATCGTATAACTCGTTTCTGAAGAGTTCGTCCCCCACCAGTGCCTTCTGTATCAGATCCCAGAGATAGCCACTTCCTCGTTGTTTATATCTCGACCACCATGTTCTAGTTTATTACAATTAAACTTCCTTCGTGCGTTAATGGACGCTCTGCGTGCCGTCTCCGTCGCCCGACCGCAGCTCCGTTATCAGATATGAGACCTCCGTAGACTGAGGTCACCTCAAACTCGCTTCTGTTTTCGCTTTAAACGCCTCGCCGAGTGAACCGGACTCACCATGCCCACCCTGACCTCCAAGTGGCGCTATCTGATCATGCTGCTTGGCGTGCAGCTCATCGTCATGGCCCTCCTGTCCAGAGAGACTTACCAGAAAAGAGTGACGTATTTTTTCCGGATCTTCCGCAAACTGGATGTGCTGAGCGGCGTCTCCGGGTCGGGAACGGCTCACGGGTCGAACCACACCGGCGCCGACGTCTACGCCAACCTGTCCCAACTGGCGCTGTTGTCCAGGAGTGAGGACATGCGCTACTGCCCTAACACATCACCACTACTCAGTGGGCCGATCCACGTCAGCTTCCCCTCAGGACTCACACTCGCTCAGGTGGAGAGGAAGAATCCCCTGGTGGTGCGCGGGGGACGCTACAGGCCTCCGGACTGTGAGGCCCGGCATCGCACCGCTATAATCATTCCCCACAGGAACAGAGAAAAGCATCTGAAGTTCCTCCTGTACTACCTACACCCGTTCCTACAGCGACAACAGCTGAGCTACGGCATCTACGTCATCCACCAGgccGGTAACTACACGTTTAACCGGGCGAAGCTGATGAACATCGGGTTCCGTGAGGCGATGAGGGAGATGGACTGGGACTGTCTGTTCTTCCACGACGTGGATCTGATCCCCGAGGACGACCGCAACACGTACACGTGCGACAAAAACCCCAAACACGCCGCCATCGCCATGGACAAGTTCGGCTACAAattgCCCTATAAGGCGTATTTCGGCGGCGTGTCAGCACTGAGTCCTCTACACTATCTGAAGATGAACGGCTTCCCCAACAACTACTGGGGCTGGGGGGGTGAAGACGACGACATCGGCATCCGCGTGTCTCTGGCCGGGATGTCCATCAGTCGTCCGTCTCTGAGGATCGGCCGCTACAAGATGATCAAACACAAACTGGACGAGGGCAACGAGGTCAACCCTAAaagGTTCAGTTTGTTGGCGAAGACGCAGCAGACGTGGAAGTCGGACGGGATGCACTCGGTGGAGTACGAGCTCCTCTCCCGGGAATACCTGCCGCTCTACACCAACATCACCGTCAACATCGGCACCGAGCGCGGCCTGCGACCTCTGACCCCTAAACCCAAGGCCAAAGAGCGTGCAGAGAACCGACCTGGACGCTGACACACGctgaccccacacacacacacacacacacacacacacacacacacacacgcaaagagAGTGCAGGGACGACGTCTGAATGGAGTGCGTAGTTTGGGGGCGGAGCCTCTTTAGTGCATAAATCAGGTTATAAACTctagtgccatctcttcctctctctctctctctctctctcttcctctctctcttcctctctcttcctctctcacttcctctctctctctctcctctct

Function

GO: NA

KEGG:

id description
K07968 B4GALT3; beta-1,4-galactosyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 53198 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 53198 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 92840 713395 ~ 713801 (+) True G324197
TU384065 lncRNA upstream 197939 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 199098 607045 ~ 607543 (+) True G324160
TU384216 lncRNA downstream 494766 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 513502 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 523383 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 524980 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 562401 1378546 ~ 1378940 (+) True G324328
XM_034298115.1 mRNA upstream 23675 774289 ~ 782966 (+) False psmc4
XM_034297823.1 mRNA upstream 61121 719389 ~ 745520 (+) True gramd1a
XM_026911138.2 mRNA upstream 126271 674868 ~ 680370 (+) True LOC113524791
XM_026911162.2 mRNA upstream 142665 658481 ~ 663976 (+) True pycard
XM_026911161.2 mRNA upstream 142665 658481 ~ 663976 (+) False pycard
XM_034297824.1 mRNA downstream 15700 831845 ~ 843562 (+) True cep85
XM_034298120.1 mRNA downstream 41965 858110 ~ 893602 (+) False atp2c1
XM_034298121.1 mRNA downstream 50249 866394 ~ 893602 (+) True atp2c1
XM_034297868.1 mRNA downstream 88318 904463 ~ 906704 (+) True rpp25l
XM_026911498.2 mRNA downstream 88318 904463 ~ 906704 (+) False rpp25l
XR_004576966.1 other upstream 113 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 58166 745673 ~ 748475 (+) True G324206
TU384064 other upstream 196632 607612 ~ 610009 (+) False G324161
TU384003 other upstream 199727 606086 ~ 606914 (+) False G324123
TU384046 other upstream 248502 557415 ~ 558139 (+) True G324143
XR_004576993.1 other downstream 140980 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 302123 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1326361 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1394077 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 1394077 2210222 ~ 2214261 (+) False LOC113533074

Expression Profile