RNA id: XM_034298118.1


Basic Information

Item Value
RNA id XM_034298118.1
length 3308
RNA type mRNA
GC content 0.50
exon number 13
gene id mtdhb
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 820622 ~ 831921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGTAAAAATAACGGCGAAGAAGAGGAACCGGAAGTCTCCGCGCAGTTCCGCAGAGCAGCTGTCAGCAGGCCCATTCGGAGAAATTAACAGTCGTTATTGTTCTCGCTGATTTCATGATGTTTTAATTTAAGAATCCGAGCTGTGAAATGGCGCTGGAGTGGCGAGAGGCGGCGGAGCGGATGGATGTGTACCTGAGAGAGCTGCTCTCCTCCGGCCTGCTGCTCCTGCACGCGGAGCTCGGAGTGGATGTGGGGCTGAAAGCGGAGCTGCTTCCGCCGGGGCTCCTCGCCTGTGTGGCGGCGGGACTCGGCCTCCTGCTCGCCGTGCTGCTCTGGCTCTCCGTCTGCCGCTGCTTCTCTAAAAAACCCGCCGAGAAAGTCGCACCTGAGGCGGGGAAGACCTCCAAACCCAAATCCGAGGAGGTGAAGAAGAAGAGcagaaagagaggaggagataagAAGGCGCAGAGGAACGGCCTGGCTGTTGACCTGGAGGAGGAGCTAAAGCCGGCGGAGAcacagaaccagaaccagaaccagaaccaccAGAGCGAGAGTCCAGATCCAGCTGGGGGGAAAAGTGATAAGggaaagaagaacaagaagaaggcGAAAGCATCGGTGAAGGAAACGAAGTCTCCGTCGACGTCGGAGCACAAAGAGCCAGAGGAAGGAACCTGGGAGACGAAAGTGAGTCACCGAGAGAAGCGACAGCAGCTGAGGAAGGATAAAGGAGCGGGAGATGAGTCGGGCAGTCCCGGAGGAACGGAGCCGAGGGCTAACGCTGCAAACACGGAACACACGGCCGCTGTGGAGGAACCTAAAATCATCCTGACACCATCTGTAACCTCCAACGCCACCAAGACCTCCAACGCCAACACCACCAGGACCACCAACACCAAGacctccaacaccaccaccaccaagacTTCCAATaccaacaacaccaccaacaccaccaacaccaagacttccaacaccaccaacaccaccaatgccaccaccaccaagacctccaacaccaacaacaccaccaccaccaagacctccaccaccaccaccaccaactcCAAGACCACCAAAAACACCAAGACCACCACCGCTCCTGCACCTAAAGCTCAGAAGAACGGTCAGAGAACCCAGCAGGGGGTTCCACCGGGAGAACACGAGCCTCCTGTTGCTGAAGTGACCCGTGCCGTCATTCcaccagTGTCTCGCGCGTGGGACGTGATGACCGCGAAACGGATCAGGATCTTGGGATCTGGGCATGTCGGttcctcctcacacacagaccTGGAACAGCGTGAAGTCCGAAGCGTCCGTCTGGCCTCAGGACATGGAGGCTCGTGGATGATCGTAGACGGTTCTCACATTCCGGTCTCGCTCCACGGAATGACTGCAGgtgttgaAGCGACGGTTGTTCCTGAGCGACCCTGGGCGTGTCCAGCCCCCGTGGATGACGAGTGGTCTGGACCCAacagCGGTTCTGCAGATCCGGCGTCGGATTACTGCGCCCCGTGTGAGGAGTGGGGGAATTACGAGGAGCCAGCAGGTGGCGCTGTTTCTCCTGACGAGCCTCAGGATTCCGATCCGGAAAAGGACAAAGACGAACCTGCGGCTCCGGGAAGCAGCAAagccaagaagaagaagaagaaaaagaagaaagcgGAGGAGGCTGGAAGTGCTGCTCAgATGGAGgtggaagtgggcgtggctaaagaCCAGAACACTGCAGGGAACATTTTGCCTAAAACCACAAAAGAGCAGGAAATCGTGGTTTCTCCTCGAGTCCCGCTGAAACCGACTGAACCTGAGGCTCCGcccaaaaacacagctccgccCACTCAGAAGAAACCTGAGGAGAGCTGGGAATCTCCGAAACAGGTCAAGAAGAAGAAGGCGCGGAGAGAAACATGAGCGCGGATTTCAGGAAGAAACGTCGATATGCAAACGTCCAGGATTTCAGAGAGACTGCGAGTCGTGCTTCGGGTGGATTAGCGCGCTAACGTGAGCGCGAGTCTCCGTGCATTCGGACAGCAAACAGTGTAACATATCAGTCCTGTGGGTGTGCTGTACAtcaggcatgtgctgataatcatTTCATATCGCGATATTCCGCTAACATTTCATCACGGTTAACGATAATATCGTGACGTTGTCGTGGATCAAAGATTAGAAAATTGTGAGATTTTACTGTTCGGAATAAAGACGGCTTCAAGTTTTTAAACGCTAAATTGTCTTCGCTGCTAAATATCGTGATGTATCGTCCACCGATAATCAGCACATGCCTGACgtacactttaataaaatgtcttttttttccctttttgagTGATTAATTAGGTTAATTTATAATTCTGTAGTGAATCTGACGACATCTTGTTTAGTTTTGGGTtaattttttggttttgttttaaaaaaaaaaaaaaagaaaatttcaggaaaaaaaatgaaacgtCCACAACGTCTCGCTCGTCTCTAAATGTAGCCAATCAGCGTCAAGTTTTTACGGTTTTAGTTTTGGAAAGTCCTGGAGCTACGAAGTTAAAAGTTAACATAGCTAACGTGTTATAGAAGTCTGtcattcaaaaagttttcaaaaaaaaagaaaaaaaaacctcaatttCATACACTTGCTTAAAATGACATCGTAAAACTTTCGTAATCTCATTTCTTAAAATTAACGGatgttaaaaatattagaaaaaccTGTTTGTTTACATATCGATAGTTTAGCGGTTAACGTTACCATCTTCTGGAGGCGGAGCCTAGAGGAGTGGAGTGATAGCGAATTCAGTATTTCGTCTGATCGACTGCATTTAGCGTAAACGGGACGCGGTGGACGTTTCATTTTTAGCCGTTACGTTTCTGAAGGACTGACGTAGTTACAGCGGTAAATATTTCGTTCGGTTTTGTATGCGGTAAAAGCCATACGTGGAACGTTAAACGTAGACGTTGTTTTCTATACGAGTTCTAATAGACACGTGTCGCCTGTTAAACCCGTGTGGTAAACTCCGCCCACTTTCCCCCCCTCATTTGCAtgtgtaatttgtttttaaCCCGTGACCGTGCTCAGGctctataaaaatgaaaagaaaacggTGAGTCACGTGATCGAACGGCGTTTCCCCGGACCTcgcgctgttttttttttttttcggtaaTGCGACGGAACTCCGATGCCTTAACGTGGCGTGTGCGCAGTGACAGCGTCGTGGCCGTCTGTCTGCTGCATGCACTTTTCCTCCTCTGTGCATTCTGTCCATCATCATCTCATTAAATAAACGTGGATTCTTTGCAAACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384662 lncRNA downstream 6289 812339 ~ 814333 (-) False G324616
TU384663 lncRNA downstream 7532 812339 ~ 813090 (-) True G324616
TU384643 lncRNA downstream 28135 791946 ~ 792487 (-) True G324602
TU384626 lncRNA downstream 37529 743547 ~ 783093 (-) True G324589
TU384617 lncRNA downstream 38296 781085 ~ 782326 (-) True G324584
TU384669 lncRNA upstream 10345 842266 ~ 842622 (-) True G324622
TU384711 lncRNA upstream 48688 880609 ~ 955392 (-) False G324649
TU384715 lncRNA upstream 49718 881639 ~ 882286 (-) True G324650
TU384714 lncRNA upstream 49943 881864 ~ 882286 (-) False G324650
TU384710 lncRNA upstream 55370 887291 ~ 955392 (-) False G324649
XM_034298199.1 mRNA downstream 49649 753243 ~ 770973 (-) True scn1ba
XM_034298198.1 mRNA downstream 49651 752642 ~ 770971 (-) False scn1ba
XM_034298197.1 mRNA downstream 49651 753237 ~ 770971 (-) False scn1ba
XM_026911139.2 mRNA downstream 149787 664062 ~ 670835 (-) True si:ch211-225p5.8
XM_026911160.2 mRNA downstream 179115 613922 ~ 641507 (-) True fli1rs
XM_034298084.1 mRNA upstream 15914 847835 ~ 856733 (-) False ubxn11
XM_034298083.1 mRNA upstream 15914 847835 ~ 856733 (-) True ubxn11
XM_026911505.2 mRNA upstream 65405 897326 ~ 902262 (-) True LOC113525074
XM_026911513.2 mRNA upstream 83998 915919 ~ 919909 (-) True si:dkey-11p23.7
XM_034297959.1 mRNA upstream 211392 1043313 ~ 1102117 (-) False nek11
TU384611 other downstream 92988 726627 ~ 727634 (-) True G324579
TU384497 other downstream 464001 350738 ~ 356621 (-) False slc4a7
XR_004576952.1 other upstream 215662 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 538555 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 598011 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1256338 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 2405780 3237701 ~ 3239147 (-) False LOC113532533

Expression Profile