RNA id: XM_034298134.1


Basic Information

Item Value
RNA id XM_034298134.1
length 2336
RNA type mRNA
GC content 0.41
exon number 10
gene id txndc5
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8944385 ~ 8955194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGAAAGCGCAAGCAGCGCAGTCCCCTTTCATTCACTGTGGTTGAGTGTCATCATGGCCACATCATCGCTGAAAATGCACCGGGTTTTAATAAGTGTCCTTTGCAGTGCATTTCTCTTTAGTGTAATATTGTGCGATAATGGAACAGACGAGGATGAGCATACCAAGCATACTTACACAGTGGAGATGTTCAACAACGCTATTCCGACTGCTCCACACTTCGTGATGTTCTTCGCACCTTGGTGTGGTCACTGTCAGAGGCTGCAGGGGACCTGGAATGAGCTGGCTGAAAAATACAACACCATGGAATCTCCCCCTGTCTATGTGGTTAAAGTAGATTGCACAAAGGACACAAAGTTTTGCTCCAGCAACCATGGTATTCGGGGATATCCCACTTTGAAGCTGTTTAAACCTGAGCAAGAAGCAGTGAAGTATCAGGGCCCAAGAGACCTGCATTCCCTAGAGACCTGGATGCTGAAAACTCTTCAGGAGGAGCCAGAGGTGCCACAGAGTGAGCCTGAGGCTCCCAAAGTGCCAGAGCCCCTGCAGGGCATGTATGAGCTTACTGCCTCCAACTTCAAAGCACATATATCCAAAGGCTCTCACTTTGTGAAGTTCTTTGCACCATGGTGTGGCCATTGCAAAGCTATGGCTCCCACATGGGAGCAGCTTGCCACCAGTTTCGAACACTCAGACTTGGTCAAGATTGGCAAGTTAGACTGTACTCAGCATTATGAGATCTGTTCAGAGAACCAGGTGCGAGGCTACCCCACGTTGCTCTTCTTTACAGATGGAGAAAAGGTAGAACAGTACAGGGGAAAACGTGATCTGGAGTCCTTTAAAGAATTTGTGGATAATCAGTTAGCAGCTGCCTCTTTAATAGATAAGGATGCTGCTGAAGATGCAAAAGGCAATGAAATACCACAGAACACAGATTCTGTTAAAGATGAGTCCACTGTTAAAATCCTCACTGAAAGCAACTTTGACGAGTCTATTGCTAAAGGGATTTCCTTCATCAAGTTTTATGCTCCTTGGTGTGGCCACTGCAAGAACCTGGCTCCTGTTTGGGAGGACCTGTCTAAGAAGGACTTTCCTGGCCTGACTGATGTCAAGATTGCTAAAGTGGATTGCACTGTAGAGAGGACACTCTGCAACAGATTTTCAGTGAACGGATACCCGACACTGCTGATATTCCGAGGAGGCCAGTTGGTGGAAGAGTATAATAGTGGACGGGACTTGGAGAGCTTGCACAGCTTTGTCATGAAGCAAGCCAGAGATGAGCTGTAGCTCTACCTCATTACTCACAAATATCCTGTACTTATACCTGATCTTGTTCTGTGTTTTCTACTAGCTAGGCTAGCATGTATTTCCATAAATGAAAACATGCTCCTGCAGAAATATACAAAAGCCATTCTTCAACTTTCCATTCTTGTCTATTTTTTTATGAGAGCAGTTACTATAATTTTATCATTAAGTGAAATCTGAATGTATTTGATTTCAGCTAAGGGCGTTTCACTTGGAGACCAATGGATGGAAAAGGTACTTCTGATTGACAACCACTTTTCCAGTAATAGAAatacctcctttttttttttttttaaaaactgtctaTTCAACATTTAGTTAGCATTATAATCTGGCTTATTGGGCCAGCAATACAGTTTACTGTTACTCTAAGAAGAATCTTGTAACTTGGCTCTCAGGGAGAactttttgtgttaaataagGAGTTGTTCCTTCATTCTGCCTTTTCACCCCAGTTCATAGACGTCTTTTACACTTAAAAACTGCACATTTGTGTTTCGTCTCATATAAGGTTTGCCTGTGGGAAAACTCAGCCTTTAAAGCCATCTTCAGTCATCACTTGTCTGTATGTTTCCCAATTTATCTTACTTATTACACCTGACCAGTTGATCAACATACCCTTTTAGAGCTAGTACACAGTGATTAGTGCAGGCAAAACACAAGTCCTAGACTCACATTGAGAACCAGTGGTGGGGTTTTAGGGAGATTTCTGAAACGTAATTTTTCTGCAGAAGCCTTTATCTTGACTAGAAAATACTTGACTAGAAAATGTAACTTTTGATTCAAGAATTAGCATCATGTTATGACActtgaaaattaaaatgctaaaacatcAATTTTAGCACTACTTATAAGTTTAAACGAACACTGCGATCTTGTATATGTATGATTATTCTCACATACATTTTATTGGGTTTCTTCTATACCTTTTTCTATACCTGAAAgatttatgaaagaaaaaacacatacacattgtCCATGCAGAATGCAGTACATGCAGAAGCAGAGCAGTATCTTTCACTACCAAATGAT

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K13984 TXNDC5, ERP46; thioredoxin domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390299 lncRNA downstream 2027 8942137 ~ 8942358 (-) True G329447
TU390289 lncRNA downstream 23372 8920280 ~ 8921013 (-) True G329438
TU390255 lncRNA downstream 93073 8847485 ~ 8851312 (-) True G329404
XR_004576950.1 lncRNA downstream 105391 8823190 ~ 8838994 (-) True LOC117595776
TU390107 lncRNA downstream 193341 8750842 ~ 8751044 (-) True G329290
TU390329 lncRNA upstream 55267 9010461 ~ 9010665 (-) True G329461
XR_004576976.1 lncRNA upstream 94046 9049240 ~ 9050902 (-) True LOC117595798
XR_004576977.1 lncRNA upstream 102021 9057215 ~ 9081783 (-) True LOC117595799
TU390402 lncRNA upstream 394272 9349466 ~ 9349837 (-) True G329531
TU390570 lncRNA upstream 620190 9575384 ~ 9575695 (-) True G329686
XM_026924128.2 mRNA downstream 107554 8830847 ~ 8836831 (-) True si:dkey-197c15.6
XM_026924162.2 mRNA downstream 278530 8652432 ~ 8665855 (-) True cavin1b
XM_026924820.2 mRNA downstream 297876 8589264 ~ 8646509 (-) True rpgrip1
XM_026924035.2 mRNA downstream 622225 8308408 ~ 8322160 (-) True LOC113532599
XM_026923926.2 mRNA upstream 7578 8962772 ~ 8967175 (-) True bloc1s5
XM_026923927.2 mRNA upstream 9223 8964417 ~ 8967175 (-) False bloc1s5
XM_034298003.1 mRNA upstream 496180 9451374 ~ 9472412 (-) True mak
XM_034298004.1 mRNA upstream 496180 9451374 ~ 9472391 (-) False mak
XM_026923977.2 mRNA upstream 496181 9451375 ~ 9472412 (-) False mak
TU389089 other downstream 1558079 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 1881957 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 2514453 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 2966006 5829474 ~ 5978379 (-) False zfpm2a
XR_003404173.1 other upstream 1329640 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 1567538 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 1967932 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 2127074 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 3721387 12676581 ~ 12677933 (-) False LOC113541288

Expression Profile