RNA id: XM_034298140.1


Basic Information

Item Value
RNA id XM_034298140.1
length 2064
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC113532744
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6085341 ~ 6087808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGCTATGTGGTTTTCTCTAAATGTTCGCTGTTTTGGAATTCTGTTCCTGATGTCCATCAGCTTGAAACAAGGCAAGAAACAGCTCCTTATAGCTGGAACAACAATAGTGATCTTCTTGAACATTCGGAACACTCTGATGAACCTGAAGGGACTTGGAAAGAGTTTTGTCTGCAATTTGGAGGAAAAGCTTGTTGCCATTAACATAGCACCTCTCAGCAACTATATCCACATGCTAAAATGGGTGGCTTCCAATCTTAAAGAAGGTCTGACCAATATTTTGGGGGTGGCTTATCACACTGACTTCAAACTGAAGCCAATTGTGCATTCAGGAGAGTTCACGAAGAAAATATCTGAAGCCCAGACGACCATGAATAAGACTGCTGAGAGTGTGTTGGTGGTCATTAATGGAATTTCATCCATAGGAAAGCAAATATGTCCAGTTTTAGGGGTCATGATACTCATTATTGCCACGGGTCTGTACCTGAGGAGGTTTCGCTTcagcagaaagcagaaaaatgtgttaattacaaaaaaattcttGAAGTATGATGAAAGCCAACGATTACAGGGAAAGCCCTCAGTTCTTCCTCTGACTAAGAAGGAGTCAAAACGTTACATTATTGTTCCGTCTGCCCATTTAACCAAAAAAGATGTGAAAACCATGCTTAAATTCAGCATCTCGATTGTAAGTCATAGTATGGCCTGGATCTTCTTCGTAGGACTTGATGGTCTTGTTTATTGGATTATCTCTGTTTTAAGCAAGCGATTAGAAGAGCTGAAGCCACTCCATGTTCCTGTGTTACTGAAAGTGGAGGAAGGAACCTTCTTTATCGGCATTAAAGTTGAACGTAAGCAAAAAGTCTATGACTTTTCCTACGATGTGCCCATTTTTGAAAAGAAGTGCTTGCCAGCACCAGAACTATGGCTCTACAAATCAGTCCTCCCTCTGTCAGTCATCTTTGGATTGCTGGTTCTTCTGGTCCTGGTGTCTTCAAAGCTCAGTCAGTTGAGACTCATCGTGTCTGAGCAGTTCTACTCAGAAGACGCAGAGAAGCGGATTGCTGAGCTGCATGCCAAGATCCTGAAACGAAGATCGAAATGGACGGCCAAGAATGCAAAAAGAACCCTGAAATCATTTGCCACACAGcTCCAATTTTGGTTTCCCATCATTTTCCGTTGTCAAAACACCAACCatgagaataaaatataaggtttgttttcagtttatttttaaatatctcgctcatttttatttttatagacaaAACCTAGCTTCATTGGTATACATTTTGTATGCACCCGTTAGACATTATTAGAAAAATgggctaaatctggaattgTCTCTCTGGGagactcttaaaggttctatgtctAACTGTACAAATACAGCAGCTAAGAACCTTTACCTATCCAAAAAAcctaaagaacccttaaaatacccttttttattacataatgcAGATACTTGAGGTGAATTTGTGTCATATGCATTGTTGTGTgctttcatatatttataagaAATGTTAATATTTCGGATGCTTAAACACCGTCTTTTCCATACCggttatttattattgtatatgtTGGTTATtagatttttcattaattttaaaattaattttgtcattttaattttttaaacttcagaATACTGGTTATTTGACTATAgttgaatattaatatatttatataacatactCATGCTGTTAATACACTGTCATTGCTTATTGTTTGGATTATATATGATGTAATGTacagattatttatatttaagcatcaataaagaaaagaatgaaaacaaatgtgTATGCAGTTTACTGTATAGTTGGAAAATACAGATCAAGGTCATATTGATATGGAAATTGTGTTTATTaccaaaatatttctttttattacagaacttgtaaaattttacattttaatgttgctgAAAAGCATCAATAGAAACTATCACTGCTTTCCAAATGAAGTATGGATGAAAAACATGACCATTTCAGAAGGGCTAAAAGAGAAAAGATTATAGGTAATAGATCCTCAAGCTGAAAAAAGTGATAGTTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388102 lncRNA downstream 692 6083366 ~ 6084649 (-) True G327560
TU388047 lncRNA downstream 247064 5837883 ~ 5838277 (-) True G327508
TU388046 lncRNA downstream 247559 5837489 ~ 5837782 (-) True G327507
TU388044 lncRNA downstream 249035 5836070 ~ 5836306 (-) True G327505
TU387897 lncRNA downstream 345753 5738537 ~ 5739588 (-) True G327362
TU388498 lncRNA upstream 168595 6256403 ~ 6331285 (-) False arhgap33
TU388686 lncRNA upstream 560488 6648296 ~ 6708767 (-) True G328083
TU388687 lncRNA upstream 560488 6648296 ~ 6741046 (-) False G328083
TU388824 lncRNA upstream 943556 7031364 ~ 7032724 (-) True G328215
TU389090 lncRNA upstream 1289079 7376887 ~ 7378436 (-) True G328439
XM_026924617.2 mRNA downstream 106962 5829474 ~ 5978379 (-) True zfpm2a
XM_026924618.2 mRNA downstream 230789 5829474 ~ 5854552 (-) False zfpm2a
XM_026924547.2 mRNA downstream 305948 5603689 ~ 5779393 (-) True oxr1a
XM_026924549.2 mRNA downstream 305948 5605292 ~ 5779393 (-) False oxr1a
XM_026924548.2 mRNA downstream 423667 5605292 ~ 5661674 (-) False oxr1a
XM_034297918.1 mRNA upstream 6223 6094031 ~ 6288364 (-) False rims2a
XM_034297915.1 mRNA upstream 6223 6094031 ~ 6288364 (-) False rims2a
XM_034297900.1 mRNA upstream 6223 6094031 ~ 6288364 (-) False rims2a
XM_034297906.1 mRNA upstream 6223 6094031 ~ 6288364 (-) False rims2a
XM_034297901.1 mRNA upstream 6223 6094031 ~ 6288364 (-) False rims2a
XR_003403372.2 other downstream 106962 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other downstream 107073 5876096 ~ 5978268 (-) False zfpm2a
TU387192 other downstream 1107814 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 1107888 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 2846194 3237701 ~ 3239147 (-) False LOC113532533
trnam-cau_47 other upstream 342052 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 968986 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 1290972 7378780 ~ 7386306 (-) False sec61b
XR_003404173.1 other upstream 4197026 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 4434924 10522732 ~ 10523263 (-) True G330185

Expression Profile