Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034298173.1 |
| length | 1180 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | zgc:112408 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 17960988 ~ 17963471 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU395485 | lncRNA | upstream | 53307 | 17907366 ~ 17907681 (+) | True | G333938 |
| TU395484 | lncRNA | upstream | 55763 | 17904953 ~ 17905225 (+) | True | G333937 |
| TU395321 | lncRNA | upstream | 110193 | 17849795 ~ 17850795 (+) | True | G333801 |
| TU395319 | lncRNA | upstream | 164467 | 17781820 ~ 17796521 (+) | False | pan3 |
| TU395317 | lncRNA | upstream | 203059 | 17757724 ~ 17757929 (+) | True | G333799 |
| TU395521 | lncRNA | downstream | 49456 | 18012927 ~ 18015594 (+) | True | G333966 |
| TU395506 | lncRNA | downstream | 58268 | 18021739 ~ 18026962 (+) | True | G333953 |
| TU395574 | lncRNA | downstream | 80353 | 18043824 ~ 18045177 (+) | True | G334005 |
| TU395604 | lncRNA | downstream | 115680 | 18079151 ~ 18079370 (+) | True | G334028 |
| TU395608 | lncRNA | downstream | 121848 | 18085319 ~ 18108804 (+) | True | G334032 |
| XM_026938160.2 | mRNA | upstream | 9362 | 17942428 ~ 17951626 (+) | True | chodl |
| XM_026937954.2 | mRNA | upstream | 178577 | 17761531 ~ 17782411 (+) | True | pan3 |
| XM_026938142.2 | mRNA | upstream | 221403 | 17727853 ~ 17739585 (+) | True | atp6v1ab |
| XM_026938144.2 | mRNA | upstream | 254870 | 17678898 ~ 17706118 (+) | True | boc |
| XM_026938146.2 | mRNA | upstream | 254870 | 17678898 ~ 17706118 (+) | False | boc |
| XM_026938188.2 | mRNA | downstream | 9733 | 17973204 ~ 17983420 (+) | True | lipib |
| XM_026938136.2 | mRNA | downstream | 124176 | 18087647 ~ 18097915 (+) | True | ythdf3 |
| XM_026937924.2 | mRNA | downstream | 251392 | 18214863 ~ 18217206 (+) | True | bhlhe22 |
| XM_034298031.1 | mRNA | downstream | 351883 | 18315354 ~ 18323295 (+) | False | mtfr1 |
| XM_026938225.2 | mRNA | downstream | 409251 | 18372722 ~ 18378196 (+) | True | dnajc5b |
| TU394792 | other | upstream | 658984 | 17287160 ~ 17302004 (+) | False | G333388 |
| TU394795 | other | upstream | 659291 | 17292031 ~ 17301697 (+) | False | G333388 |
| TU394798 | other | upstream | 660977 | 17285082 ~ 17300011 (+) | True | G333388 |
| TU394801 | other | upstream | 660977 | 17287160 ~ 17300011 (+) | False | G333388 |
| TU394797 | other | upstream | 665934 | 17287160 ~ 17295054 (+) | False | G333388 |
| TU395491 | other | downstream | 23291 | 17986762 ~ 17993014 (+) | True | G333943 |
| XR_004576961.1 | other | downstream | 351885 | 18315356 ~ 18323295 (+) | False | mtfr1 |
| XR_004576962.1 | other | downstream | 351887 | 18315358 ~ 18323295 (+) | False | mtfr1 |
| XR_004576959.1 | other | downstream | 351889 | 18315360 ~ 18323295 (+) | False | mtfr1 |
| XR_004576960.1 | other | downstream | 352212 | 18315683 ~ 18323295 (+) | True | mtfr1 |
