RNA id: XR_004576973.1


Basic Information

Item Value
RNA id XR_004576973.1
length 4691
RNA type misc_RNA
GC content 0.51
exon number 30
gene id LOC113532774
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8388187 ~ 8550238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTAGTATGCGGAAGTTGCTAATTTTTGGACTGTGAAACCTGGCTAAAGAGGATGAATAAAAGCTGAACTACCGTGGTAGGCTGTGCTGTATAGCTACACGCGTTACAGTCGCGTTGTCTGTGCTCAGTTTGTATGCAGTAACGTGTTTCGTCATGAAGTTCTTCACTGTTTATGTTGTTGGGTGTTAGCTGTGCTGCACCAAGGGCTGAGAGACAGTCAGGATGCTGGAGTCATATGTTACTCCACTGTTGATGAGCTACGTGAACCGCTACATTAAGAACCTGAAGCCTTCTGATCTGCAGCTCTCACTCTGGGGAGGCGATGTGGTGCTCAGCAAGTTGGATCTCAAACTGGATGTTCTGGAGCAGGAGCTGAAGCTTCCCTTCACTTTCCTAAGTGGTCATATCCATGAGTTGCGAATCCATGTACCATGGACCAAGCTGAGCTCAGAACCAGTGGTCGTCACAATCAACACCATGGAGTGCATCCTCAAGCTGAAAGATGGCTCTCAGGATGAGAATGAGAGCAGTGCATCCAGTTGGAGCGCCTCTGAGAAGAGTGTGTCTAAACCTCGACGAGTCCAGCAGAGTTCCCCTGACCCTGACTTACCCCCAGgcTATGTACAGAGTCTGATCCGCCGTGTAGTAAATAACTTGAATGTTGTGATCAATAACCTGATTCTGAAGTACGTGGAGGATGACATAGTGCTGTCAGTCAACATCACGTCAGCGGAGTGCTACACAGTGGATGAGCAGTGGGACAGGGCCTTCATGGACATCACCTCTCCTAAGTTTGTTTTGAGGAAGGTGATAAATTTTTCAGACTGCACAGTGTGTTTGGATAAGCGGAATGCCAGTGGGAAAATTGAGTTTTATCAGGACCCGTTGCTCTACAAGTGCTCCTTCAGAACCCGGCTTCACTTCACCTACCACAACATCAATTACAAAATCCCAGCCATCATCAAAatcCACACAATGGTTGAGAGCCTGAAGCTGTCTCTGACGGACCAACAGCTTCCCATGTTTGTGCGGCTGCTGGAGCTCGCAGTGGCTCTATATTACGGGGAGATTAGAGctcagagagatggagagagagaggagagtacCTCTACCACTGAAGTTGTGGTTAACATTCCAGcAGGGGTGGTGAGTGAAGGAATGGATACAAATGCATCAGGTCAATACTCAACACCAGATCAATGCATGCAAAATGACAGCGAGGATCAGGGCTGGGTATCGTGGGCCTGGTCCTTCGTCCCGGCCATCATCAACaccgaggaggaggaggaatatTACGCTGAGATGGAGAACACCGGGAATCCCAGCCCACTACAGTCCTCTCTCAGGGAACCCATAGTCTCTGTAGGGTTCTACTGCACCAAAGCCTCAGTTACATTCAAGcTGACAGAGAGCAGTTCTGAGAGCAGCTACTATAGCCCTCAGAAAGTGAAGTCACAGGAGGTACTATGTGTGGAACAGGAAGGTATCACTGTGGAGGCATTGATGATGGGAGAGCTATTTTTTGACTGTCAGATTGGGGTGGTAGGCTGCAGGGCTCTGTGTCTGAAAGGTTTCATGGGAGTGTGGGACTTTGAGAAGACAGGCAGAAAAGAAGagGATGCTGTGTTTTTCAACTGCGGAGAGAATCTAAGCTCTAAAGGAATTACCTACTTGACCAATTCACTATTTGACAGCCGCAGCCCAGAAAACAATGGTGTCCGTGCTGAATTTATACTAGATGCCAACCTCCACAAGGAGACCTACACTGAAGAAGCAGGGCTACAGCGCTTCGGCGCCTTCTATCTAGATTACCTCTACACAATGGAGAATGAGAGTGGAAAAGGGCAACAGGATTTCTCTCTGATGGGTAAGGGGGATTCTGGTCAGTCAGTTCAGGAAATGTCGGTAAAACGATTGGTGATTGGGCCCCTGGATCTGCTGCTTCATAGCAGTGCTGTCCATCGCATCTTGAAGATGGTCGCCTGTGCCATGGACCACGAATATGAGCCCTACTCCACACTGAAACCAGATGTGGTGGAGGAGAGCAAGGAGGTTCCTCCAGAGAATGAGAGAGGCTTGGAAGAATTTATCCCAACACGGCTGACCTGTGTGACACTACTGAAGGTCTCCATTACTGTCACCATGGCAGAATTCAACCTGTTGCATATACTACTTCCTGCTGTATTGGGTCAGAAGGGTTTGGCTGTGCAGTTGACTACTACACAGTTCCATCCAGTGAGGCCACTGCCTGCACTTCGAATGCAGGTAGAGAGGGTGAATCTGGAGCATTCTGTGCCAATGTATGGCACAGAGCTCATCCGCACTGTCAGCAGCCTCAGTCTGCCCTCAGACAACCTACTGCACCACTGCTACACCCACTGCTGTCTGAAGGTATTTGAGTTGCAGGTTGGATTGACCCTGCTGGATAACGAAGGCACACCTCCACTCTTACCTATAATTCCCTGCTTTAGTACTGCCCTCTATGGGAAGATACTTCAGTTTCCCACGCGATGGCCAAAGAGGTCCTCAGTGTCCATAACGGAATACCTCTTTGAGTTACCCAAATTCACAATGCAGGCCACTCATGCTCAGATGTTGCTGTTGCACTGTTTGTGGCGGAGTTGGACACACAGCACGGAGAGTGGGGTCGGTCCCACTGCCAGCGACTCTCTCATCAATGAGATCTTCAGAACACCAGgtgtaggtgtgaAATGTGCTCCCACTTTGGAGCTATCAATACAGAGTGTGGAGCTAAAGGTGTGCCAGAAGGCAATGCTATGGTGTGCTTCAGGAATGTTGGGAGCAGTCACACTGTGTTCCAGGACCCAGGGTATAGGCGAGCGGCAGAAGGAGCAGCTGGTGGTCGTGCTGCAGGGCCCGGCTGACACACGAGAGCTATACAGTAGACACTGGCTGTGTGAGAACCGCCGTCCACAGTCTCTTCTAGCTCCAGACCTACTCACTTTCTCGCTACAGATCCCCCAGCCCACTGGAGACTGGCATAACAGTGgtGCCGTACTACTTGTTGGTGTGCAGGGCATTGCTGTAAATTTGGATCCTATTTTGTCCACTTGGCTGTTGTCCCACTCTCAGAGACCCACAACAAGCTGGCAGACACAACAGACTGTTGGTAGTGGTTCCATGTTAATGATGAAGACAAGGGAGGATGAAGCATCAGTGGCCAGTACTCCACTGGCCAaacagctttccaatcaggcaTCAGACTACATCAGCAGCCCAATGAAGACAAAGACCATAACAGAGTCTCGTCCCCTTTCTATCCCAGTGAAGATTACACAGTCAGCAACTGAGTATGCAGCATCTTCAGAGGAGTGGATAAAGAACTTAATCACACAGGCCTGGGATGCTGTCAAGCGTCTTACGCTGcagGTGGATCTGCAgtcatgctgtgtgtttgtgcctaAGGACACTCTGCCATGTCCCTGCACCATAGTGTGTGGTGATATCCCAGGCACTGTGCGCAGCTGGTACCACAGCCAGGCCTCCATGCCAGGGACGTTAGTAATCTGTCTGCCCCAAGTCAGCGTGATAAGTGCTGGGCATAGGCACATGGAGCCCTTACAGGAGATTCCCTTCACTGTGCAAAGACCTGTACTGGAGGAGGgtgaCGCTTTCCCCTGGACAGTGACAGTAGGCCAATTCAGTGTATATACATTGCTGGGGCATCAGCGCTCACTCTCTCTACTGGAGCCGGTAGGCTGTACGTCTACCCTCGCTGTCACCTCCCACAAACTGCAGCCAGCTTCCACCTCTGTCGACTCCAGACATGCCTTCATCATTTGCCTGCATGTAGACCTGCAACCACTTTATTTGAAAGTCTCCAACCCACAGGTGCAGCTGTTATACGAGTTGTTTCTAAATTGGAGCAGTATTTGGGACTGTCTGCAGAGAAGAGGAATCTTGTGGCATGCATCTGGCTTTCAAGGGGAACCTCCTTCCCAACCTGCTGGATCTACCTCCCCCTTCCACAGCAGTGCAGGCACCATTCCTCCTGATAACGTCAGCCTCAGTCGTTCAGCTGACTTGGGCTCCCCCACAGAGGGTGACTCTGTGCCAACTGGTGAGGACCCCTCCTTCTGTGAGCCTCTAACTCTAGAGCAGAAGACGAGCACCATTGGCGGGGCCAGTGGGAAGGTTAGCCTGTGGATGCAGTGGATGCTGCCCAAACTGACTGTCAAACTGTTCGCTCCAGACCCAACCACGAAGACAGAGATCTGTGTGCTCAGTGAACTGGAGGATCTAAGTGCATCAGTGGACATGCAGGACGTGTACACCAAACTGAAATGTAAAGTGAGCAGCTTCAACATTGACCATTACAGGAGCAGGCCAGGTGAGGCTGACTGTTTTGAAGGAGTGATTCTGCAGTGCAAGGAGAAAGCAGTGTGTGAAGGCTGGTCCCatgtggccaggtgtgtgtaGTGGGGTGCTGCTATCCTGCACGGACAAACTGAATCGACGTACCCTGCTGCTCCGCCAAGCCAAGCACCAAGACCCCTTCAGCCACTTTTCTGCCTTCTTTTCTCCTACGGCAGCAAAGGCTTTGGAGGCATGTCATCAGCCTCATGGCTTCCTGtcactgacatacacacaggccGTGACCTGCAATGTCCTCCATAAGCTAACAGCACGACAGGAGAGAGCAGGACCTCAGAGGCTGAGTAGTGGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389845 lncRNA upstream 9453 8374954 ~ 8378734 (+) False osr2
TU389833 lncRNA upstream 51605 8336352 ~ 8336582 (+) True G329042
TU389774 lncRNA upstream 124151 8257525 ~ 8264036 (+) True G328995
TU389722 lncRNA upstream 171533 8216446 ~ 8216654 (+) True G328944
TU389478 lncRNA upstream 252024 8135517 ~ 8136163 (+) True G328755
TU389908 lncRNA downstream 167603 8652436 ~ 8665836 (+) True G329111
TU389928 lncRNA downstream 209570 8694403 ~ 8699160 (+) True G329126
TU390105 lncRNA downstream 263987 8748820 ~ 8749033 (+) True G329288
TU390192 lncRNA downstream 458045 8942878 ~ 8945556 (+) True G329354
TU390202 lncRNA downstream 488404 8973237 ~ 8973587 (+) True G329361
XM_026923923.2 mRNA upstream 9291 8372685 ~ 8378896 (+) False osr2
XM_026923922.2 mRNA upstream 9291 8374836 ~ 8378896 (+) True osr2
XM_026923924.2 mRNA upstream 9291 8374837 ~ 8378896 (+) False osr2
XM_026924643.2 mRNA upstream 53460 8330651 ~ 8334727 (+) True LOC113532920
XM_034297934.1 mRNA upstream 53460 8330651 ~ 8334727 (+) False LOC113532920
XM_026923965.2 mRNA downstream 73734 8558567 ~ 8579074 (+) True LOC113532557
XM_026924114.2 mRNA downstream 192522 8677355 ~ 8745970 (+) True atp6v0a1b
XM_026924116.2 mRNA downstream 192522 8677355 ~ 8745970 (+) False atp6v0a1b
XM_026924117.2 mRNA downstream 192522 8677355 ~ 8745970 (+) False atp6v0a1b
XM_034297944.1 mRNA downstream 283913 8768746 ~ 8821311 (+) True LOC113532648
TU389428 other upstream 485579 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 3049936 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3458033 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3464506 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 4374649 4011410 ~ 4013538 (+) False hamp
TU389909 other downstream 130240 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 283912 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 283913 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 368495 8853328 ~ 8856276 (+) False bmp6
TU390686 other downstream 1306851 9791684 ~ 9792733 (+) True G329779

Expression Profile