RNA id: XM_034298182.1


Basic Information

Item Value
RNA id XM_034298182.1
length 4289
RNA type mRNA
GC content 0.53
exon number 37
gene id atp8a2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17543823 ~ 17605193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCGGGATGCGCGCTCCCGCTGTAATGCGCGCCGCCAAGCCCTGGATGACCTAACGTTTGTGACGATGCTCCATCTGTCGGAGAGCGCGGCCCCGTGTGCAGTCCGCTTGCCCCCCTGAGCTGGGCTTCTGGTCCACGGCTATGCTCTCGGTGCGCTCGGTGCGCTCGGACGCCCGACACCCGCAGCCGCAGGATGTACTTTAACCGGCGATCGAAGAAGATCCACAGCGAGGGAGGACCCGCCTGCTCGTCCACCGGCTACCGCAGGGCAGAAGACGAGATGTCCGCCAGCACATCGCACGCGGAGCCCGCAGACGTCTCGGCGAGGACCGTGTACCTCAACCACACACAGAGCACCAAGTTCTGCGACAACCACGTCAGCACAACTAAGTACGGCATCTTCACCTTCCTGCCTCGCTTCCTGTATGAACAGATCCGGCGAGCTGCCAAtgctttcttcctctttatCGCCCTAATGCAGcaaATCCCTGATGTCTCACCGACAGGACGCTACACCACACTGGTGCCCCTCATCTTCATTATGACTGTGGCCGGAATTAAGGAAATTATTGAGGACTATAAACGGCACAAAGCAGACAACACAGTGAACAAAAAGAAGACAACAGtgtTGCGCAATGGCGCATGGCAGACTATCATCTGGAAACAGGTGGCAGTGGGAGACATAGTGAAGGTGACCAATGGGCAGCATCTCCCCGCTGACATGGTCATAGTGTCCTCCAGTGAGCCTCAGGCCATGTGTTACACCGAGACCTCGAACTTGGACGGAGAAACCAACCTGAAAATCCGACAAGGTCTCTCTCTTACAGCCAGTCTGCAGTCCGTAGAGGAGCTGATGGGTCTGTCTGGTCGGCTGGAGTGTGAGGGACCTAACAGACACCTGTATGACTTCACTGGCACATTGCGACTGGACAACCataaTCCAGTTCCTCTTGGACCGGATCAGGTGTTACTCCGAGGAGCACAGATTAGAAACACGCAGTGGGTTGTAGGAATCGTTGTCTACACCGGCCATGATTCCAAACTCATGCAGAACTCCACTAAAGCTCCTCTGAAGCGCTCCAACGTGGAGCGAGTGACGAACGTACAGATCCTGGTGCTGTTTGGGATCCTCCTTGTGATGGCACTGGTGAGCTCTATTGGTGCGGCCATCTGGAACAAGCAGTACAAGGACGTGGAGTGTTGGTACCTCTCccgcacagGTGACATCTCCCTGAACTTCTGGTACAATCTGCTGACCTTCATCATTCTGTACAATAACCTGATTCCCATAAGCCTGCTAGTCACACTGGAAGTAGTCAAGTTCACACAGGCCCTTTTTATTAACTGGGACAGGGAGATGTACTACGCTGAGACGGACACACCCGCCATGGCACGCACGTCCAATCTGAATGAAGAGCTCGGCCAGgtgAAGTATCTGTTTTCCGATAAGACTGGCACTCTGACCTGTAACGTCATGCATTTTAAGAAATGCACCATCGCCGGGATCACATACGGGCATTTCCCAGATCTTGACTCCGATCGATCCATGGAGGATTTCAGTCACCTTCCCTCCAGCAACCACAGCTCCACAGAGTTTGATGATCCCGCTCTCATTCAGAACATAGAGAAGAATCATCCCACCTCTCCTCAGATCTGTGAGTTTTTGACTATGATGGCTGTGTGTCACACTGTGGTTCCTGAGCGAGATGGAAACCAGATCATATATCAGGCCTCCTCACCAGATGAGGGAGCACTGGTTAAAGGTGCCAAAAGCCTGGGCTTTGTGTTTACGGCAAGAACTCCACATTCCGTGATCATAGAAGCGCGTGGAAAAGAGTTGACTTATGAGCTGCTTAATGTGCTTGAATTTTCCAGCAACCGAAAGCGCATGTCAGTAGTGGTACGAACTCCAGCAGGAAAACTGCGACTGTATTGCAAGGGAGCGGATAACGTGATCTTTGAGCGACTGAACGAAGCATCCCAGTATAAAGACCTGACCGTAGCTCACCTCGAACAGTTTGCCACTGAAGGTTTACGGACTCTGTGCTTTGCGTACGTGGATCTGGAGGAGAGCGCGTATCATGAGTGGCTGAAGGAGTATAATCGTGTAAGCACAGTCCTGAAAGACCGAGCACAGAAACTGGAGGAATGCTACGAGCTGCTGGAGAAGGACTTGTTGCTGCTCGGAGCCACAGCTATAGAGGACCGTCTGCAGGCGGGAGTCCCTGAGACCATCGCCACTCTCATGAGGGCTGACATCAAGATCTGGGTGCTGACCGGAGACAAACAGGAGACCGCCATCAatatcggttattCCTGCAGACTGATTTCACACGGCATGTCCCTCATCATCGTCAACGAAGACTCTCTGGATGCAACGCGGGCCACGCTGATCGCTCACTGCTCTTCTCTGGGTGACTCTCTGGGGAAGGAGAATGATTTAGCGCTCATCATCGATGGCCAAACGCTCAAATATGCTTTGTCATTTGAAGTGCGTCAGGCTTTTCTCGACTTGGCCCTGTCCTGCAAGGCTGTCATCTGCtgcagggtGTCTCCTCTGCAGAAATCAGAGATTGTAGATATGGTGAAGAAGCATGTGAAAGCGATTACACTGGCCATCGGAGACGGAGCCAATGACGTGGGTATGATCCAGACGGCACACGTCGGAGTCGGAATCAGTGGTAACGAGGGCATGCAGGCCACCAACTCGTCAGATTACTCCATAGcacagttCTCATACCTTGAGAAGCTCCTGCTGGTCCATGGAGCCTGGAGCTACAACCGAGTCACTAAATGCATCCTGTACTGTTTTTACAAGAACGTGGTGTTATACATCATAGAGCTGTGGTTTGCATTTGTAAATGGCTTCTCGGGGCAGATTCTGTTTGAGCGCTGGTGTATCGGACTCTACAATGTGattTTCACGGCTCTCCCTCCCTTCACATTGGGGATTTTCGATCGTCCTTGTAGCCAGCAGAACATGCTCCGCTTCCCACAGCTGTACCGCATCACACAGAACGCAGACGGCTTTAACaccaaggtGTTTTGGGGTCACTGTATAAACGCTCTTATCCATTCTATCATTCTCTTCTGGTTTCCgctgaaagtactggaacatgacacTCCGTTCGAAAATGGCAACAGCGTCGACTACCTTTTTGTGGGAAACATTGTGTACACGTACGTGGTGGTCACAGTATGCCTGAAAGCCGGGATGGAGACCACAGCATGGACCAGGttctCTCATCTGGCAGTTTGGGGCAGCATGGTGCTCTGGATGCTCTTCTTCGCTGTTTATTCCTTTATCTGGCCGCACATTCCCATTGCCCCAGACATGCTGGGCCAgGCCGGCAGGGTCATGCAGTGCTGGAGCTTCTGGCTGGGATTGATAATGGTGCCGGCTGCGTGCCTGCTCAAAGATGTGGCGTGGAACGCagGGAGGCGCACATTAAAGAAGACTCTCCTAGAGGAGGTGCAGGAGTTGGAGGCGCGGGCTGTTGATCCTGGTGCGGCCGTCCTCAGAGATGCCAGCGGCCGCAGTCTGAACGAGCGCGCCCACCTGTTGGCTCGGGTGTTCAGGAAGACGCCGTCCAGCGTGGGGCGCTCCAGCTCCGTACAGCAGACCGTCTCACATGGCTATGCATTCTCCCAGGAAGAGCACGGGGTTGTGTCCCAATCCCAGGTAGTGCGTTCTTACGACACCACCCGCCAGCGGCCCAGCCTGTAGCTGCATCAGTAACAAGATTGCCAAGGCGGCAGCTGAGACTTTTTTTAAGGGACATTTCCATCCCACGTGAGCCTGCTGTGGCCTTACTGAAGTAACTGGACTGAAGTGGACTTGGCCTGCACCGCGCCAAGCCTCGCTACACACTTACCAAGCCTTTTCAGACAAGACTCAACTGTGGGAAATTGGGTGGGGACAGTGCtggggggaggggaggggaaTAATCTCGCAAAGAAAACGGCCAGTCAGAATGTGCCATGCTGTGAAGGACGGGAATGAGGAGCCAATCAGCATCCAGACTTGATGCATGGAAACCAGAGACACTggtgtttctgtctgtatctATCACACTGCGGTACACAGCCCTGTGGATGTTGTCATGCATGTGCGTATACAAACGAGCgtatgtgtgtttagtgtgagtgtgtgttctcttgtttatatgtttgtgtgtgtatgtgtgtgtgtgtgtgtgatttctgtttctttgaGTTTGGACTTCAGCTCATCCGTCATCATCAGTGCAATGCAGGAGGAGCTCTCGAAAATAAACATCAAACATAC

Function

GO:

id name namespace
GO:0030153 bacteriocin immunity biological_process
GO:0015914 phospholipid transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015643 toxic substance binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395113 lncRNA upstream 2063 17540637 ~ 17541761 (+) False rnf6
TU395063 lncRNA upstream 96781 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 180749 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 357149 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 645969 16893006 ~ 16897855 (+) True G333244
TU395303 lncRNA downstream 62443 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 65223 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 102529 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 136208 17741401 ~ 17745040 (+) False G333795
TU395312 lncRNA downstream 138085 17743278 ~ 17756282 (+) True G333795
XM_026938240.2 mRNA upstream 1437 17535944 ~ 17542387 (+) False rnf6
XM_034298078.1 mRNA upstream 1437 17536216 ~ 17542387 (+) True rnf6
XM_034298075.1 mRNA upstream 40121 17496077 ~ 17503703 (+) True gpr12
XM_026938072.2 mRNA upstream 51506 17483693 ~ 17492318 (+) True usp12a
XM_026937819.2 mRNA upstream 77372 17452164 ~ 17466452 (+) True lnx2a
XM_026938033.2 mRNA downstream 16753 17621946 ~ 17629485 (+) False spice1
XM_026938032.2 mRNA downstream 16910 17622103 ~ 17629485 (+) True spice1
XM_034298053.1 mRNA downstream 31190 17636383 ~ 17653613 (+) False LOC113541191
XM_034298051.1 mRNA downstream 31238 17636431 ~ 17653613 (+) False LOC113541191
XM_034298054.1 mRNA downstream 31238 17636431 ~ 17653613 (+) False LOC113541191
TU394792 other upstream 241820 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 242127 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 243813 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 243813 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 248770 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 381569 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 710163 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 710165 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 710167 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 710490 18315683 ~ 18323295 (+) True mtfr1

Expression Profile