RNA id: XM_034298198.1


Basic Information

Item Value
RNA id XM_034298198.1
length 2337
RNA type mRNA
GC content 0.45
exon number 6
gene id scn1ba
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 752642 ~ 770973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctcagtcagtgCTGTATCCTTCCTTCCCTCGCATCATGCCATCCCTCCTCCGTCCGGATCTTTGGAAATGCGCACACTGGCTTCATTCAAGGAAGAAATAAGCgatttagagaaaaataaattactccTGCATTAATAAAGCAACGGATTTTTAAGGGATAAAAAGAGGAGCTTCGgtgggagaaggagagagagagagagagagagagagagagagagagatcctgcGGCTCTGTCCCAAATCCACATGCACAGTGTGCGAGGTAGGCAGCATGAAGCCCTGAAGAACTGAAGGACgcactgcatttatttatttattttttattttttgcaacaCATGCAGTTTTGACTCAGTGATTCAGATGATGGAATGTAGCTTCTGCTGAACTGAatgcataattaataatgtgcactgtagaatttttttttcttctacttgATAAATGATTTCTGATTGAAAGagaagcatttatttttatttttgtgaatcaTCCACGCTTGCACCATATGACCATCTGGCATGAAGGATAACTGAAGCTGCGGAGGTGGaccactgaagaagaagaagaagaagaagaaggggcCTTACTGTAATCTGTGTGACCTGAACACACTATctatactcaaaaaaaaaaaaaagataaggacagattaaatatttatgtccGTCTACGTCCATGCAGATTTCCATGAGCTTAAAATTTAACAATCCTCACACGTCTAGATCTTCATGTAGGTCTCGTCCACTCATCGTCCATTTTCAtagagcaataataataataataaatagtaataataataataataaggtaaGAACTTCACTGGAATGTATCGGCTACGTGAAACCAAAGACgcgtaagaaaaaaaaagttgtgcgATCCACGCTTCCAATCTTCCATTCTCAATCAGTCACTGTGCGACATCTTCTACATCTTCATCAGCTTCATCTTCATCAGCTTCATCTTCGTCATCTTCTCATCTTCTCAGGTCAGTCGGCTTTTCCTCTCTGTCACGCTCGTCATTGCCGATTGCTCGTCTTCCACGCTATGCACTCATCACagactttctctttctcttaaaCATCACAAACCTCAAAAAGTTCAAGTCTTCCATTACAAACAAGGAAAGCTgtgaagtgtaaagtgtaaagattGATTTTTGATCAgagaatttttctttttaaaaaaatagctatGTTATAGATAGGCTAGCAACACAACGCTAACAAAAGAAAGAGTCACATCATCgcgaaaaaaaaatattctggaTTCACAAGCCGAGTGAAGAGCATCGCTGAAGTGAACGCTCCTTTACTGAGTTGTAGTGAACACTTTATGATTGTGGAAACTGAAGGTTGCATTGCTAACAGAAGTAAACAGCTGGGAAGTGAATTAAAGCAACACTTCAGGACCACGTGGAGAAAGTGAACACTGCATTACTAAACACTGAAGAGACTTCCTCTGTGAGGGATCCGGCTCCTTCTGAAATCCACTGCTGCATCgtgggacacacacagagagacccTCTGATCTCCAacagcgcgtgtgtgtgtgtgagagtgtgtgtgagagtgtgtatatgtgtgtgtccctCTCCTGGGTGAAGATGACTGCAGTCCAGGTGATGTGGCtcccgctgctgctgctgtgcatCACACATGCTCGGCTCAGCAGCTCGGCGTGTGTGGAGGTCGACTCGGACACCGAGGCCGTGGCAGGAAAGGATTTCAAGCTGGGCTGCATCTCCTGTAAGATGCGAGGCGAGGTGGACGCCTCGGCCACTGTGGACTGGTGGTTCATGGCGAAAGGAGAGAGCGACTTCACCCACATCTACAGCTACAGCAACATGATGGGCATGGTGACAGACGAACGCTTCACGGGCCGTATCGAGTGGGTGGGCAGTAAAAAGACGTTGGACCTTCAGGATGGATCTCTGAACATCCTCAACGTCACGTACAACGACACGGGGACGTACCGCTGCTACTTCGACCGCACGCTCTCCTTCACCTACTACGAGTTTCGCACCAACACCACCAAATTCATCACCATCAACGTCGTGGCCAAAGagacaCGTGGCATGGCCTCCATCCTGTCGGAGGTGATGATGTACGTGTCCATCATCGGCCTGCAGCTGTGGTTACTGGTGGAGATGGtttactgttacaggaaaatcgCTGCTGCTGGAGAGGAAGCGCTGAGAGAGAGCGcGGCCGAGTATTTAGCCATCACATCTGAGAGTAAAGACAACTGCACCGGCGTGGCTGTGGccgagtaacacacacacacacacacaCAGGACCATAAAAACTCTGAAACTTCACCATGATG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0017080 sodium channel regulator activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384613 lncRNA downstream 4141 727811 ~ 748501 (-) True G324581
TU384612 lncRNA downstream 5078 747019 ~ 747564 (-) True G324580
TU384602 lncRNA downstream 38857 713329 ~ 713785 (-) True G324571
XR_003402592.2 lncRNA downstream 40279 709872 ~ 712363 (-) True LOC113524788
TU384594 lncRNA downstream 51384 695222 ~ 701258 (-) False G324563
TU384617 lncRNA upstream 10114 781085 ~ 782326 (-) True G324584
TU384643 lncRNA upstream 20975 791946 ~ 792487 (-) True G324602
TU384662 lncRNA upstream 41368 812339 ~ 814333 (-) False G324616
TU384663 lncRNA upstream 41368 812339 ~ 813090 (-) True G324616
TU384669 lncRNA upstream 71295 842266 ~ 842622 (-) True G324622
XM_026911139.2 mRNA downstream 81807 664062 ~ 670835 (-) True si:ch211-225p5.8
XM_026911160.2 mRNA downstream 111135 613922 ~ 641507 (-) True fli1rs
XM_026911137.2 mRNA downstream 140522 606087 ~ 612120 (-) True fbl
XM_026911130.2 mRNA downstream 147627 598396 ~ 605015 (-) True alkbh8
XM_034297808.1 mRNA downstream 147844 598396 ~ 604798 (-) False alkbh8
XM_034298118.1 mRNA upstream 49651 820622 ~ 831921 (-) True mtdhb
XM_034298084.1 mRNA upstream 76864 847835 ~ 856733 (-) False ubxn11
XM_034298083.1 mRNA upstream 76864 847835 ~ 856733 (-) True ubxn11
XM_026911505.2 mRNA upstream 126355 897326 ~ 902262 (-) True LOC113525074
XM_026911513.2 mRNA upstream 144948 915919 ~ 919909 (-) True si:dkey-11p23.7
TU384611 other downstream 25008 726627 ~ 727634 (-) True G324579
TU384497 other downstream 396021 350738 ~ 356621 (-) False slc4a7
XR_004576952.1 other upstream 276612 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 599505 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 658961 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1317288 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 2466730 3237701 ~ 3239147 (-) False LOC113532533

Expression Profile