RNA id: XM_034298203.1



Basic Information


Item Value
RNA id XM_034298203.1
length 1214
RNA type mRNA
GC content 0.47
exon number 6
gene id zgc:101716
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6304581 ~ 6312558 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TGAGCACCTGAGCTGTTCTTCAGCCACAGTCTCAGTGTCGCAGAAGAAGCAGCTCAGCTCACCCAGGCAGGCTGCAGTAAACAGAGACGGCATGAGACTTTCCTCTGCTTCAGATCATGGAAATCTTCGGGAGCACGTTTGATGATTCGGTATTTGAGGAATCGCGAAAGAGGGATTTATCTACAGATCTTCCCGCATATACACCTAAAACCTGCGATCCAGAgTGGTTTTGTCACTATGAAAAATTCGAAGACGAGCTAGATGAACAGAAAACTCTGAAGTTCCGGGCGGATCTGaaatacaggaaaaaacaaTATCAGGAAGCTCTAAAGGACTACACAGCATGCCTTCCTCTGGTGCCTAATAACAATCTGTCAATGAAAAGAGATGTGTTGGAGGGAATAGCCCGGTGCTGCAGTCATCTGGGAAAGAGCAGACAGGCCCTAGAGATCTGTGAGAAACTGAGGAACGAGGCGACCAACACGTGCCACCTGACCTGCGTCCTACAGCTGGAACAGAGCATCCACGAGGGCTGTGGAGACGTGACGAGCGGCATCTCTAGTCTGAAACAGCTTTGCTCTGTGCATCCTTTCAACCCTTGGCACTGGCTGAACCTGGCCACGAGCTACCAAAGCCTGCTGGAGTCATCCACCTCCCTCGAGGATCTGAAAGACACGCCTCAGACACCTCAGGCCTTcattcagcagcagcaggagaagAAGGAGGTGCGGCTGAAGGcgtgcatgtgttttattagaACAAGGCTGCTGATTGAAATACTGAAGATTCAGCAGTTCTCATTTGTCCTGGAAAGGAGCAAGAAAACCCTTCAGGCCATTGAGGCGTCTCTGCACAAGATGCAGCTCAAAGAGGAAACACTCCGACTCATTTCTGAGGTAATGGCGGAAGATCTGAACCCAGAGAAGATGCGTGAAGAGAACCAGGATGGTGAGGGTTTATCAGGTCTTACCATTAAGGACTTTGAGGGAAGGTGGTGGAACAAACTACATGCCTGCCTGCTGATGAAAGAGAATACAGTCTTATCAAGTGATAAGGAAATGGAGACGGGGACACCAAGGACACCAACATGAACACCAAGgattttactataaaaatggatttaaatgtttgtgtacagTGATGCAGGTTTTAATGATTTGGTGTTATGAAGAATGTTTTGGGATTTtacaaataaagattttaaatgtttacta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU387927 lncRNA upstream 462143 5842219 ~ 5842438 (+) True G327391
TU387921 lncRNA upstream 471319 5832993 ~ 5833262 (+) True G327385
TU387696 lncRNA upstream 697482 5605870 ~ 5607099 (+) True G327178
TU387573 lncRNA upstream 762692 5541358 ~ 5541889 (+) True G327071
TU387473 lncRNA upstream 989992 5311231 ~ 5314589 (+) False acbd7
TU388624 lncRNA downstream 335722 6648280 ~ 6708779 (+) True G328024
TU388766 lncRNA downstream 637001 6949559 ~ 6961376 (+) True G328161
TU388815 lncRNA downstream 710597 7023155 ~ 7029401 (+) True G328208
TU388835 lncRNA downstream 732488 7045046 ~ 7045278 (+) True G328222
TU388878 lncRNA downstream 815608 7128166 ~ 7136722 (+) True G328260
XM_026924312.2 mRNA upstream 220327 6066133 ~ 6084254 (+) True dpys
XM_034298144.1 mRNA upstream 399164 5796162 ~ 5905417 (+) False si:dkey-122a22.2
XM_034298142.1 mRNA upstream 438057 5796162 ~ 5866524 (+) False si:dkey-122a22.2
XM_026924620.2 mRNA upstream 466251 5796162 ~ 5838330 (+) True si:dkey-122a22.2
XM_034298143.1 mRNA upstream 474521 5796162 ~ 5830060 (+) False si:dkey-122a22.2
XM_026924697.2 mRNA downstream 6529 6319087 ~ 6326360 (+) True upk1a
XM_026924097.2 mRNA downstream 342217 6654775 ~ 6759822 (+) True LOC113532640
XM_026924098.2 mRNA downstream 342217 6654775 ~ 6759822 (+) False LOC113532640
XM_034298057.1 mRNA downstream 717223 7029781 ~ 7043670 (+) True tbrg4
XM_034298058.1 mRNA downstream 717400 7029958 ~ 7042817 (+) False tbrg4
TU387482 other upstream 966330 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 1374427 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 1380900 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 2291043 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 3734842 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 1589234 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 2075629 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 2302515 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 2456187 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 2456188 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile