RNA id: XM_034298226.1


Basic Information

Item Value
RNA id XM_034298226.1
length 4706
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC113541144
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15417104 ~ 15559455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCTTTCACTCTTCTATGGGGTCTAAATTTGGtgctggaggatggtctcctcTCGACACTGATCATTACCCATGGCTGCAGGTGGACCTGGGCAGCAGGAAGCAGGTGACTGCCATCGCCACTCAGGGTCGATACAGCAGCTCGGACTGGACCACACGCTACCGACTGCTCTACAGCGACACGGGCAGGAACTGGAAACCCTACCATCAGGATGGAAACATCTGGACATTTACAGGAAACTCAAACACAGAGAGCGTCGTGCGCCACAATCTTCAGCACACCATTGTGGCCCGATTTCTATGCTTTATCCCACTGGACTGGAGTGAAGAGGGACGAATAGGCCTGAGGATAGAGATCTATGGCTGCTCATACTGGGCTGATGTGATTAACTTTGATGGCCAGGGTGTGATCTCCTACCGTTTtaagatgaagaagatgaagatccTGAAGGACGTGATAGCGCTGAAGTTTAAGACGGGTGAGAGTGATGGGGTGATCCTGCATGGCGAGGGTCAGGAGGGTGATTACATCACGCTGGAGCTGAGGAGAGGAAGACTGCTGCTCCAGATAAACCTGGGCAGCAACCAGTACGGCTCCATCCTGGGTCACACGTCGGTCAGCAGCGGCAGCCTGCTGGATGATCATCACTGGCACTGGGTGGTGATTGAGCGCTACAGGAGAAACGTTAACTTCACCCTGGATCAGAACACGCAGCACTTTCGCACCAACGGAGAGTTCGACCACCTCGACCTCGACTATGAGTTGAGTTTTGGAGGGATGCCATACTCAGGCAAACCCATCTCAGGAGACCGGAGAAATTTTAAAGGCTGCATGGAGAGCATCAACTATAACGGTGAAAACATCACAGACCTGGCtagaagaaagaaagtggaCACGTCCAGCTTTCGTAATTTGACATTCTCCTGTGTGGAATCTCACACCTTCCCGGTTTCCTTCAACGGCACAAGTTTCCTGCAGCTGCCAGGTAGAAGGGAGCACAACATGGTGTCTGTGAGCTTCCAGTTTCGCACGTGGAACTCTAACGGCCTGCTCCTGTTCAGCGCGCTGGCTGACGGCATGCTGGAGCTCACGCTGAAAGACGGCAAAGTCGCTGCGCACATCAGCATCACGCAGCAGAAGAACTCACGTGTAGACATGATGTCAGGTTCAGGGCTGAATGATGGAGAATGGCATGATGTTCGTTTCTTGGccaaagaaaacttcaccatgctGACCATCGATGGAGACGAGGCTTCGGCTGTGAGAACCAACACACCCATTCAGATCACCACTGGAGGAACGTACCACTTTGGAGGTTATTTCCTGCAGACCCAGGCGTCTCCATCACAGCGCTCGTTTCAGGGTTGCATGCAACTCATCCGGGTGGACGATCATCTGGCCGACCTGACGGCAGTGGAGCGGGGCATGCTGGGAGCTTTTGAGAATGTCAGCTTGGACATGTGTACCATCATAGACAGGTGCTTGCCTAATCACTGTGAGCATGGAGGAAGGTGCACTCAGACCTGGGACattttcagctgctcctgtgaTGGCACTGGATACACCGGAGCCACGTGTCACACATCTTTGTATGAACAGTCATGCGAGGCTTATAAGCACCTGGGGAAATATTCAGATGTCTACTGGATCGATCCTGATGGCAGCGGACCTCTAGGACCCTTCAGAGTCTTTTGCAACATGACAGAGGACAAGGTGTGGACGACAGTGGTGAACAACCTGCCGGCTCAGACAGCCGTATCAGGTTCGAGCAGGGACAGACGCACCGTGCTGCAGCTGAACTACAGCGCCACCATGGAGCAGATCAGCGCCATTACAGACGGCGCAGATCACTGCGAGCAGCACATCACCTACACTTGCCGCTCATCACGCCTACTCAACACTCCAGatGGGACTCCGTACACATGGTGGGTTGGCAGAGGTAATGAGAAACACTTCTATTGGGGTGGCTCAGGGCCAGGGGTCCAGAAATGTTCCTGTGGCATCGAGCACAACTGCATCAACCCCAAACACCACTGCAACTGTGACGCAGATCAGAAACAGTGGAGAGAGGATTCAGGGCTTCTGGTATATAAAGACCACTTACCTGTGAGCGAGGTAGCTGTAGGGGACACAAACCGACCCGGATCAGAGGCCAAGCTCACAGTGGGACCTCTGCACTGTCATGGAGACCGTAGTTATTGGAATGCAGCTTCCTTCAACACGCCAACCTCCTACCTGCACTTCTCCACTTTCCGAGCTGAAACGAGTGCTGATATCTCCTTTTACTTCAAGACCTCTGCGCCTCATGGTGTCTTCCTGGAGAACCTTGGCAACACAGACTTCATCCGGCTGGAGCTGAAATCGCCCAATGTCGTTACCTTCTCCTTCGATGTGGGGAACGGACCAGTGGAGCTGAATGTTCACTCATCAACACCACTAAACGACGACCAGTGGCATCGAGTCAGTGCCGAGAGAAACGTCAAAGAGGCCGTGCTTCAGCTGGATCAGCAATACAGACAGGTTCGAGCTGCACCTGCACAGGGACACACACGCCTGGAGCTCTACAGCCAGCTGTATGTGGGTGCAGCAGGAGGACAGAGAGGCTTCCTCGGATGCATCCGTTCCCTGAAGATGAACGGCGTGACCCTAGACCTGGAAGAAAGAGCAAAGGTGACTCCTGGAGTTAAACCCGGATGTTCAGGTCATTGCACCAGTTTCGGGATGTACTGCCGCAACGGAGGGAAGTGTGTAGAGAAATACAACGGCTACTCGTGTGACTGCAGCAACACGGCTTATGATGGACCCTTCTGCACTAAAGaTGTGGGAGCTTACTTTGAGGCAGGAACACTGGTCCGCTATAACCTGATGCCAGAGGTGACGTCCTCGGTGTCCAGCATGGATGGAAAGGATTTCGCCCAATCTCTGAACACAGACATGAACCTGACCCGAGAGGTTGTGACCTTCAGCTTTAGCACGTCCAGCACTCCCAGCATCCTCCTGTACATCAGCTCAAGGATCCATGACTACATGGCTGTGGTGCTGCGACGCAATGgttccCTACAGCTGCGTTATAACATCGGGGGTCTGCTCGAGCCCTTCACCGTCGATCTGGATCAGCGCAATTTGGCCAACGGACAGCCACACAGTGTCAACATCACAAGAATAGAAAGAGAAATCCACGTCCAACTGGACCACTATCCTTCGGTCAGCTACACTCTGCCTGAAGCCTCAGACACTCAGTTCAACCTGGTCAAGACTCTCTTCCTAGGAAAAGTCTTCGAAACCGGTCCCATCGACCCAGTGCTGATAGAAAAGTATAACACTCCTGGCTTTGTAGGCTGTCTGTCCCGAGTGCAGTTTAACAGCATCGCTCCTCTGAAGACGGCTCTTCgttcacagcttgctgtgtccGTCTCGCATCAGGGCAAACTGGTTGAGTCCAACTGCGGTGCATCCCCCCTCACTGTCTCACCAATGTCTGCTAACACTGACCCCTGGCACCTGGAGGGAGGTGCTGATTTCCCCTTCAATGAGGAGAGAGTCGTACCAGATGGGTTGAACAGGAATTCGACAATAATCGGAGGCATCATTGCCGTGGTGATCTTCACCATCCTGTGCACTCTGGTGTTCTTGATTCGCTACATGTTCCGCCACAAGGGAACGTACCACACCAACGAGTCCAAAGGGGCCGAACGCTCTGAATCAGCTGATACAGCCATCATCAGCGCGGAGCCCAATTTCACAGAGACCATCGAAGAAAACAAGAAGGAGTGGTTTATCTAACATGGGGACTGTACACACTCTTTCAGACTCATTGAGGATcagaacaaaatgtaaaatgctgtAATGATACAGGTATATGCTGGTATGAGGATTTATGTCTGTTTTTGCACTGGCCCAGACTGTACAATTTGTAGATGAATAAATAGAGTGACTTAGTGGGACAGGCAGCCAAAGCAGgtcaaaagaaagaagaatgtgCACCAATGGGAACAAATGTGTTGCCTGTCATCTCTGTCTCTTAttgtagacattttttaaaggcaaaagAGTACACAATGGCTTGCTGAGAGATCACATGATGGATGGCTCCGAGAGACTCAGTAAATGTGGAGCAGGGGTACGATCTGGGatagtttgctttttttctgcattttttttaacatgtatttTATATCAAGCACCTTTTTTGATCAGGGAATACTAAGTGGCTTTGTTAATTTGTTGTTAATTTGGCATAATTGGCCACTAACAGACTATCCTAAATTACTCAAATAAATGCTGTAGCCATGGACATTGATTGCACTTCTGTATAGAATGAATACATATAATGAGCTGAAACAGAACCATCCATGACTGGAAATAAAGTATTTGTATGAAGCAAGTggacttttttctgtttcaggaTGACCTGTATATACAATCTGAAGTAAGACCTCAAACTCTTTTCTGCATCAGTACTAAACATGTAACTATGGCAATGCCTAACAGCTAGTATACGTTTTACCACAAGAATAGGTTTTGCATTTAGCTTATCATTGAATTGCGATACAAAAAGCAacaaatgacattattattttgtctcaAAACGAGATGTTATGACTGACCAGCATGAGGTCCTCATTAGCAAACAAAGCACCCCAGTCACAGCGGACAGAAAAAAAGACCTGTCCATCATTTGGTGTACTCTTAATTGTAGTAGAT

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393844 lncRNA downstream 19972 15345272 ~ 15397132 (-) True G332580
TU393373 lncRNA downstream 619906 14714217 ~ 14797198 (-) True G332196
TU393330 lncRNA downstream 782178 14544032 ~ 14634926 (-) True G332164
TU393312 lncRNA downstream 852400 14537252 ~ 14564704 (-) True G332147
TU393341 lncRNA downstream 895456 14517639 ~ 14521648 (-) False G332169
TU393913 lncRNA upstream 52181 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 101494 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 106500 15620506 ~ 15620717 (-) True G332676
TU393962 lncRNA upstream 116217 15630223 ~ 15630444 (-) True G332682
XR_003404161.2 lncRNA upstream 421822 15935828 ~ 15943189 (-) True LOC113541266
XM_026937949.2 mRNA downstream 2661 15398281 ~ 15414443 (-) True LOC113541141
XM_026937950.2 mRNA downstream 2663 15398283 ~ 15414441 (-) False LOC113541141
XM_026938050.2 mRNA downstream 36829 15337379 ~ 15380275 (-) True LOC113541204
XM_026938052.2 mRNA downstream 46537 15339501 ~ 15370567 (-) False LOC113541204
XM_034297961.1 mRNA downstream 128339 15285508 ~ 15288765 (-) True LOC117595668
XM_026937893.2 mRNA upstream 65269 15579275 ~ 15582034 (-) True LOC113541101
XM_026937817.2 mRNA upstream 101492 15615498 ~ 15618842 (-) True sec61g
XM_026938187.2 mRNA upstream 263015 15777021 ~ 15899598 (-) True LOC113541299
XM_026938237.2 mRNA upstream 582975 16096981 ~ 16115913 (-) True LOC113541324
XM_026938238.2 mRNA upstream 611111 16125117 ~ 16140956 (-) True tnfrsf11a
TU393587 other downstream 351294 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 479700 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 2739171 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 2739171 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 4333953 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 1316690 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 1316690 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 1602092 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 1671518 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 2393888 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile