RNA id: XM_034298229.1


Basic Information

Item Value
RNA id XM_034298229.1
length 1451
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC117595802
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19335026 ~ 19336650 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTCAAAGCAAATCACCCATTCCTCCGACAGCAAGCAACAGTGCCACAGAAATAGTGGAAAATGTCTTTGAAAGCATCCTTGCTTCCGTAATTAATGGCGACATTCGGAACCCAGATGATAGCATTGATACGGATTTTTCTGCTAGCGTGATCAATACTCTTGCTAGTCATGTCttcaatagtgtgtgtgaatgtgtcctTCAGAGCATTAACTCAAATGACAGCCAGAGTCCACTCCAGGAGCCAACAGGTAGTGCCGATAAAATGTGTAGATCTCAAACTGTGTTCATACCTGAAGATGAATCAGATATTGCCCTTGGGAGACGCCAGGCTTCTTCACTGATGGATATTACGACAGTGTCCGGAATTTCCGAGGATGAGGGCTTCTTGGCTGCTTCTGGAAGCATGAGCCACCTTGATGACCCTGTGACTTCAGGAATTGAAACATCTGACTCTGATGTGGCTAAAAACATTCTTGAGGAGGTCACTGCTACTCCTGGACAAGTGAGCAACCTTGAGGAACCTCTTGAAAAAGCAGCCACTGACGCAGCTTTTCTTGAGGGGTTGCCCACAAGTGATATTGACTTGAGTCCAGTCAACAAGCCAACAGAAAATGTTGCCCACAAGTCTAGATCTGATGAAGGAGCAGAAGAGCGACTTGTGGCTGAATCAGATGTTGATCTTGAGCAAGTCTTTGCTACTCCTTCTAAGGAAAATATTCCATCTAAGGTTACTGCCCAAGACCTTCAGCTGATTGGACACCAGGAACGTGCTAGCCTTATACCTTCACCACCCTCTACTAAGAAGCCAGACTCTCCAAGAGGATCTGCCAGGAGAAGGACAGATCTTATCACAAAGGCCCGCTCTTTACCAAACATGTACTTTAATAAGGAAGATGGCATCCCTGACCAATCTCACCAGAAGCATAGCATGGAAAAGGGATCAGGTATGTCCAGAAGCACAAGCAGCCTTGATGAGCCTCTGACTTCATCCAAAACATCCAACCTTGAAGAAGCTGCAGAAACACCCACTGCATACAAAGCAATACTGCGTGGCTCCAAGAAACAACCCAAACCAGCGACAAGTGATGCGTCAAAGGAAGACCTCAAAgcactgaagaaaaaaagaatgttttccattttaaagaTCAGGGCTTTTCCAACAAAACCTAAAATGCCGGCAGCAAAATCTGCATCATGTGACAAAGAACAAAATTCTACTTTAGGTTCTTCTGTACCTCTTGATCAGGAGAGCAGAGTCCAGAAGGAAATGACCAAACATGTTCCATCCATAAACTGTGACTTTTTTGAAGACCAGAGTTAAATACAGCATGCATGCGGCGCAGTGTGGTATGGCTCTGAAACAACTCCACACCCAGGATGATAATCTGACTCACACAATCAATCAGGATTCAGATAGTATTTTGGATTAGGATTATTTAGGATTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396221 lncRNA upstream 401775 18933049 ~ 18933251 (+) True G334575
TU396219 lncRNA upstream 402316 18932502 ~ 18932710 (+) True G334573
TU396029 lncRNA upstream 481023 18761089 ~ 18854003 (+) True G334386
TU396027 lncRNA upstream 587549 18722416 ~ 18747477 (+) False LOC117595806
TU396406 lncRNA downstream 9239 19345889 ~ 19351752 (+) True G334733
XR_004576958.1 lncRNA downstream 184715 19521365 ~ 19522260 (+) True LOC117595782
TU396487 lncRNA downstream 224452 19561102 ~ 19589060 (+) True G334806
TU396561 lncRNA downstream 300218 19636868 ~ 19703804 (+) False cip2a
TU396588 lncRNA downstream 368035 19704685 ~ 19707006 (+) True G334888
XM_034298152.1 mRNA upstream 6901 19060889 ~ 19328125 (+) False ctnnd2a
XM_034298163.1 mRNA downstream 2516 19339166 ~ 19356597 (+) False dap
XM_026938102.2 mRNA downstream 2526 19339176 ~ 19360737 (+) True dap
XM_026938081.2 mRNA downstream 55323 19391973 ~ 19395890 (+) True ndufb4
XM_026938115.2 mRNA downstream 93118 19429768 ~ 19436760 (+) True arxa
XM_026938116.2 mRNA downstream 93118 19429768 ~ 19435547 (+) False arxa
TU396015 other upstream 617073 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 955012 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 955652 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 1011731 18315360 ~ 18323295 (+) False mtfr1
TU396386 other downstream 2556 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 2556 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 2556 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 2556 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 2556 19339206 ~ 19427936 (+) False dap

Expression Profile