RNA id: XM_034298234.1


Basic Information

Item Value
RNA id XM_034298234.1
length 1800
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC113532957
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1708432 ~ 1713392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaagtgttttattcctcttacaccacagcaactggACAGTTACAAGGTACAGTGTTGTACCTCAGTAAAGTTTATGGAACAGACCATAATGATATGGCTTGTAACCAAGGAAACATGAACATTCACAGAAGCAAGTGGAAAGATGACTGGCAGAAATAGGCTACTGTTCATTTCCTCTAACAACCATGACAAAACACgaccatacacatacacacacacacacagacacaaggaaAGGATAGAAAAGTATAAAAGGAAGTAAAATGGTACAGCTACAAGATTCTGAAACATGTTCCTCTTCTCTCTGGGTCTATGCAACAGCAAGATGGATAAGTTGTGCGAGCGTTACTTTGAGAACGGATGGCTGTGGACATCTCTGATTATTTCAGCATTAATGCCTGGAGTTGTTCTGGCTGGTGACTGGGTGGTCCATGTTCCTGTGAACCCCATCCTGGCCCCTCATGGCTCCTCAGTGACGCTCCCCTGCACTTATGACTTCCCTGATGAGTCCGGGTCACGCCATGTGCAGTCTGAGATGTGGTGTCTGAACCAGAGTCAGTGCATCACACCCGCCTACGTGTACCACAGCGCCAGCATCTTCCCCGAGCCTGCGTACCGGGGCCGGGTCCAGTACCTGGGCTCGCTCGGCTCCAAGAACTGCTCTCTCAGGATAAGCGACCTGAGGATGAAGGACAGCGGTGTGTACGTGTTCCGCTTCATCACCAACCACCCTGTGAGCAAACTGCCGGGGCAGAGGGGCGTCACGCTGCAAGTGACAGATCCCCCAGTGAACACGTCAGTGATGGTCACCAGCTCAGGCGAGATTGTCGAGGGAACGTCACTCACCCTGTCCTGTACCAGCTTTACCGCCTCACCACTGATCACCTTCACTTGGTTCCAGATGAACGGAACCACGACTTTAAGAGGCACAGGCCAGAAGCTGACTATAGATCATCTCACTTCTAAAGACAGCGGGTTGTACACATGCGTAGCCCAAAACACCTGGGGCTCCCAGAATGCTACCATCATACTCACCATCCGGAAAGcagaAACAAGCAGCTCTGCCTCCACTGTTGGCATTGTGTTTGGAATTATCCTCATGCTCACAATAATAGCTACCGTTGTTACTTGTACTAAAAGacaCACTGCCTCAAAATCACTTCAGacagtgtttaatgatgatggcAACCTCTGATTCCTGTCAGATAAACAGCAGGAGAAGGAAACATTTCTACTATCTTCTGTgttcagtttatatttattgaatttagTAAGGTGTCAAAAAATGTAGCTGTATAAATATaagattacatttcattttattatgtatgtttCTTCACAATATAGAGTCTTCAGCCTCGAGCTGGATGGTGTGAACAATTCATGATGTAATAATGATGCAATGTTGTGAATagaaatactgtttttttatagTGAGGCTGATCACATGCTCTGATTCCAACTTCTTTCCAAGtgcagagaatttttttttttcaaacttttatCGTACTGTACTTGTCTAATGCATATGTTTATAAAGGcgataaataaattattttaaaaataaaactacagcattcctgtgtgtttacactcagtgtatacagtatatcattgCAATAATGATATATTGAGTTGAGTGTTTGTGGGATGCATTAATAACTACAACTATTTTTTTGCATACTGTCAGGTCAGAGCCAGGTAATGGTGaagaactacattacccatcagccccagcacaccacactcacacctgtttcctgttgcACCTAATTAGCACCCCTATTTAAGTTCcagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384946 lncRNA upstream 40589 1667560 ~ 1667843 (+) True G324842
TU384934 lncRNA upstream 52571 1655128 ~ 1655861 (+) True G324831
TU384935 lncRNA upstream 54842 1652671 ~ 1653590 (+) True G324832
TU384931 lncRNA upstream 57494 1650037 ~ 1650938 (+) True G324830
TU384929 lncRNA upstream 57667 1650037 ~ 1650765 (+) False G324830
TU385013 lncRNA downstream 22227 1735619 ~ 1739255 (+) True G324889
TU385084 lncRNA downstream 186251 1899643 ~ 1902697 (+) False smg5
TU385089 lncRNA downstream 213688 1927080 ~ 1932326 (+) True G324947
TU385237 lncRNA downstream 279864 1993256 ~ 2011981 (+) False G325076
XR_004576937.1 lncRNA downstream 286745 2000137 ~ 2001004 (+) True LOC117595767
XM_034297827.1 mRNA upstream 223903 1481899 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297830.1 mRNA upstream 223903 1481909 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297831.1 mRNA upstream 223903 1481912 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297829.1 mRNA upstream 223903 1481913 ~ 1484529 (+) True si:ch211-269k10.4
XM_026924349.2 mRNA upstream 397718 1296876 ~ 1310714 (+) True ptpn23a
XM_026924961.2 mRNA downstream 10739 1724131 ~ 1734131 (+) True dnase2
XM_034297931.1 mRNA downstream 57436 1770828 ~ 1788284 (+) False phf1
XM_034297933.1 mRNA downstream 57448 1770840 ~ 1788284 (+) False phf1
XM_034297930.1 mRNA downstream 57753 1771145 ~ 1788284 (+) True phf1
XM_034297932.1 mRNA downstream 57753 1771145 ~ 1788284 (+) False phf1
TU384187 other upstream 544818 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 698209 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 901904 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 959957 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1098423 607612 ~ 610009 (+) False G324161
TU385279 other downstream 429114 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 496830 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 496830 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 852308 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2298018 4011410 ~ 4013538 (+) False hamp

Expression Profile