RNA id: XM_034298235.1


Basic Information

Item Value
RNA id XM_034298235.1
length 6917
RNA type mRNA
GC content 0.51
exon number 49
gene id rttn
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14234044 ~ 14295771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCACAGAGCCGGAAGTAGTCGAAACTGGCGCCGTGGTTAAAAACAAAGCCGCGTCCGTGCTGTTCGACATGAAAGGACGTTAAAAAGAACGTGAACAGCtgggaaatgttttaaaagattATGTAATTAGCTAATGTTAAAGTTAAAATGGATGTATCATCTCTCATTAAAAAACTCGCTCACTCGTTAGTGGAGATCCGAGTTCGCTCCCTGAGGAACATTGTCTCCAAGCTCCAGCTCAGTCTCGTCTCCCCGTCTGATCTTGTTCAGGAGCGACAGCTCTTCATCAACCTGCTGCACTGGTTTAACTTCCCTGAAGTCCCGCTGCAGGAGGAAGTGCTGCagctcattaacacactcgctacgCATCCAACTGGAGCCTTTATGTTGAGAGATGTAGGCGGAGTGGACTTTCTAACACAGCTCCTGTCCAACATTGACCCCCAGCTTCGAAATATCACAGAGACGATCCTCGACCAGCTCTTCCATCTTCATATTTACCCGCAGAGCACTTGCTCTGACCAGCCATTGAGCTCCGATTTTCAGCCTGTGGAGGAGATGTCAGTTAGAGGATATTTCCAGCAAAATGCACCGAGCCAAACAGATGCTGCGCCACCTCCCAGTGTATCAGCGAACACCTCTGTAAGATGCTTAACGTTTTCAGTTTTTCCTTGGTTGTCTTTGACTGCAACTGACAGACACATATTATCATCGAAtgaaagCTCTTTGAGAAGCGATAATCCAGACTTAGTGCGGACCACCTGCGAGCTTCTGCGAGACGTCATCATGCAGGACTTTCCAGCAGAAATATTCCTGCAGCGGCCAAGTATAGTGCAAAATCTGGTGCAGCTTCTCAGTGTGAGATCAGAGAATGATTCCAGCTCGTTGGCTCTCCACGCTCTGGCCTGccttcagcagctctgtggaaACCTGAAAAGTCGGCTGCGCTTCTACAGAGATGCCAGCTTCTGCTCAGCCAAGCACGATCCACTCTCTCAGAACTCCTCGACGTCGTATCCTCAGGAGGCCAGAGGGACCCAGAGGTCAGGGGTTTCAACCCCGGAAGATTTGTCCCCCCGCCCTTCTGCTCTAGGACGTCCTGGTATGAGAGTCCGAGGGGACGGACAGGACGGCGATGCCGCCTCCACCAGcagcagcagcggcagcTCTCAGAGAGAATTTCCCCCCGGGCCCAACCTGGAGCCGGATGGCGAGGATCCGCCGGAGCTCCGGGTGCATCAGTGGAACATGGCCAGATTTTGCATGGAGACCCTACAGCACACACTTCCTCTCCTCAGGACAGAGAAGATGAAGGTTTTCCAGAAGGCGCTGGAGCTGTTGTCGGATATCCTCGCGTTGCTAAGGGTCATCGTGTCCCCGCATGAGCTGTGGGAAGAGTGCAGCATCACTGCAAATGAACTGaGAGAGAAGCTGCTGGAGTGTATGGAAAAGCTGGGAGACATCATGTGCCATCACTGTCACGTGGCATCATCAGAGGAATCTGACTCAACTCTGATTCACCACCGCATGTCCTACACGGGCACTTCTGTCTTCACGATTCGCCTTCTGCAAACCCTCCTACCTGTGGAGAAGGCAAGTGAGAACCTTCCTGAGAGCACAGTGTCTGCTGTTTTCCATCTCTGTCTGGATTTCCCCTTCGGTCTCGCATTTCCCAGCATTCACGAGTCAGCAGTGGCCTACCTGGAGCAGTCAAACTCTGAAAACCATAGCCTGTACTGCAGAGTTAGCCGAGCTGCTAACACAATGGAGGCCACGTGTTCTTTTCTAAAGGAGGTTCAGGCTGAGGGAGAAAAGAATTGGCTGGAGCTGCTGGAACTCGCTGGCCAAGCCATGGATGGCTTTCCCTACCATCAGCACCTACCGCTCATCAAGGAATTCGTCCGCATCTGCTCCTACCTGTGGAAGTCTGCTCAGGCAAGCCCACTGCTTCAGATGGAGAGCCAGAAGATTCTTCTGAAGCTTTTATCACATCCTCTGCTGCCAGTGAAGGCTGAGACATACGCACGCACTCTGGATGTGGTCAAGGAGTGTTTGGGCATTCATAACGTGTCCAGACCAGCTTCATCCATCTGCAGCGGTGTGCATTTCCTTTTCCACCCTCGCGTCCTTTATGAAATCAGTGCCTTTGGCCTTCATGATCAAGCAAAAGAGGTGAATTCGGCTGCCAAGGATCTTCTTCTGTACCTGCTCAAGGGACGATTGATGATGACTGCTTTGAGTTGGAGTAGATTTAATGAATCGCTTTACCCGGTCATTCCCGTGCTGcagAGTCACGCAGGCACAGAGGATGCCCTGGGAAACAGCATCCTGCTGATAAGTGGGCTCTCGGATGAGATTGGAGGCACGGCCCATTCCGCAGCACCTCGACTCCGCGCCGTAATCAGACTGCTCTTCACCAAACAACATGTGGTGAGAAGCACAGCAGCTCAACACCTGTCACCTCATCTGGCCAGTTCAGAAGACAACAGAACGTCCCGGCTTGCTGTGGACAGCTCGACTCTGTCATCACTGCCGTCTCTCTATGTTACTGACAAATGTGTGGACATCAGACTAGACGACTCCAACAAGTCTTACCTTAAGGTGGAGTGTGTGAATAAGCTGTACAGTATCTTTACCTCGGAGACGGTGGATATGGTCCTGCGCAAATCCGCAGCCGAACAGCTGGTGGTTGTTTTGCAGGatACTACAACGCACGCTGTACTGAAGACGCAGGGACTGACGGACAAACTCGTGGCTTTGATTACAGAGAGCGTGAACAGCTGTGGAGGGTCTGTCGAGTGTCTGTCCGAGCCGAGCATTACGATGCTGAGGAAGTTAGTATATGCAGATCCGTCTCTGCGTCACACACTGGCTCAGCAACCGGCTTTCCTCCTCACTCTGCTCCAAGCCTCCCTGCTGATGAAGGCCAACCAGAGAGACGTGACTGAAGCCGCAGCACTGATGTGTTTCCTGCTTTTTGATGAGATTGCCACAGTGGATGTGTGCACCGGAAAAGCTGACAAAGATACAGCCATCACTCCGTTCTCTCTGCCGGTCTGCGTTATCAGAAGGTATAATCTACCGTTTCGCGCTGCGTCTCACCACGCGGTGAGTCCCAACTGCATCGTTCTGCCTCTTTATACTGATCTGATGGAGCTGAGAGCTGCCAAGGAGGCACTGAGCTTCAGCTGGAACAGAGCCTGGCACTGCGGCACCGACACTCTGCTCACACGCAGGAGAGACAACGCCACTCACACACCTGAGTTTCATGCTGATCTGGTGATGTCAGAGTCTCAGGTCATGTCAgtgcgagtgtgtgatgtgagagcAGGGCTTCAAGAGTGTGTTAATGCGATTCGGTCAGCCGGCTCACACACCGGGGTCACCTTCGCTCTGACCAGAATACACCTTTATCTCCTGACTGATCAGTTAGCCCTTAAACACAACGCACACTCCGCCAAGAGCACACTGCAGAAACTCAGCTGGCATGGAGCTGTGGAGAGATTTCTCCAGGTGAAACCTGCTTGCCCTGAGGATGAAATGCTGCTAACGGATGTCATATCGTTCCTGAACACTTTCTTCAAGCAACATCAATCTGATTCTGATGATCAAGATCTGAAATGGCTCCTAGAATTACTCCTGAAACAGgaCACACACGTCCTGCTGGACCTACTGCTAGACGTGAAGACACACAAAGACTCTCAGAGACACACCGCGATTCAACACTGCGGACATCAACTGCAGAGAGAGCTGACCTCGCTGTtcaacacactgctgctgcatctcacacacacctccgacagGATGTGTATGCTCCTCTCCGGGCCGTTAGCATCGGAGTTTGCCGTCCGTCTGCTGCAGTGTCTCCGTGTTTCAGATGCCCCACGTTTTTACGGCCTCCCCTCTCTGGAGCGTTCTCTACGCAGCATGACACACACCACCGCTCTGCCCGGCTGGAGCACTCACACAAGCAGCATGGagccacacacactctgccagAAATACCTTAGCGGCCTACTTGAggtaaTTTCCTCTTTCTATGTGGAGTGGGGAGGGAATGCCATGTCCTTTATGGGAAAAGGAGTGACCAAGAATGCAGTGATCTCTCTGCTTCATCTGTCCCATGAGATGATGTCTGAGAGCAAGGAGAAGGACTGGATGTCTCTCTGGTCTCTTGGGCCTGAACAGAGTGCTGATGATCCGTGTTCAGCTCAGTTTGGCCTCGCTTGGTTAATCCCACTGTGGGTGGATCGTGACCCAGAGGTGCGCTGTGCCAGCCTGGCGCTGGGCGCGGCTCTCTCTACGTTAGAAAGCGGCTGTGTGATGTTGTCGAATAGCTGCCAGAACATCTCAGGCGGTTTGTGGGCGACGCTGCTCAACATCCTGCTGGAGAGACAGGAGTGCAGCATGGTGCGCCGAGAGGCAGCGTTTCTTTTACAAAACCTGCTTGTGATGCCAATGCCTGCCAACACAGAGGAGGCCAAAGACTGCTTCTGGCAGagcCCATGTGTTCATGATGAAGGATCTGGCGTGTCGTTGGTGGGTCTCCCGGCACTGCAGGCTCTTCTCTATCACTGCCATTTTTTTGATCATGTGGGTCAGATGGTGAGGAGTTGCTACACGGGTCGATACACTCCCACACACCCTTGGCCCATCAGTGCCTCTGCTGatgtAGATGACTCTGTGAGGCAGTGGAGAGGCAGTACAGCTGTGCTGAATCACACACAGGGTTCAGGATCCATTTCCACCTCCAGCACTTTGCTCCTGAGTGACACTCGTTCTCCCGTCCTCTCCTCCTCTGTAGCAGCACAGGAGCCTCCATTCAACAGACTCAGCACACAAGgTCAGAGTGACTCAGACACCTCAGGTTCGTGTCTGTCTCACGAGTGTGTAGAAGGATCAGAGTGCATCTCTGTAGTAACCCCTCACCTACTGTCAGCTGTGTGTGGATTACTAACCAACCTGCTGTGTGTTCTGCCTGAGTTCACACACACTGCGCTCCGAGAGAACCACATCCTGCAGGGCTTGCTCAGTGTGTTAGATGCAGTGGAGATAGAGAGATGCCTGAATGAGcttaacacacctgatctccTTCCGGCTGATGTGGAGGATGCCAGGAGCCAGgtactGAGTAGTGTGTGTTACGTGCGGAGTGTGTGTAAGCTGGTACAGGCCGATGTTGTGCTCAGTGAGGATTGTCTCTCCCAGTCAGAGCTCATTAAACCTCTGCTGAATAACCTCATCTCCatcctcacactctctcacacacacctcgATGTGcatacccagaatgcattgctaCACACCTGGACAGATGTGTTTACGCTGCTGGCGAGTCTGCTGCGCAGGAACTACGCGGCATGCGGCCCACATGTGCGCGGGACTCTGGGGAAACGCTGGCAGCGCTTCTCAGacACCATCCGTACGTGTGTGGACCAGTGCGGTTCGGATTCATCGCTCTACAACGTGTCTGCGcagttcctgtgtgtgttgttttctgaAGAGGCAAAGAAGCGAGGGACGAGTGAAGAGAAATCAGCTTCTCTAACTGCTGCTCTGAATTCCGAATCCGGAGAGAAACTGTGTGAATTACTGCTGGAGCGATATGATAAGACTCAGTTCCAGGACCCTCTTAAGAAGGTCACAGCTAAAGTCCTCATGCCTCTCCTTGCCTGCAGCTCCAGCGCTCAAAGTTACGCCTGCAAAGCGGGTCTTATCGACAGCTGTGTGGAACAGATCAAGCAGATCCACTCTCAGCTTCACCTGGAGTCTGTAAGACCAGGCAAAACCACACACAGGAAGAAGGACGAGAACAGCATGAAGGAGCTCAGGATGGTGCTGGAGATCCTGAGGAATTGTCTGTATCAACATAAAGAGTGTAAAGAAGTAGCAACGGATTTAAAACTCTCCTCTGTCTTGTTGTCTCTTTGGCCGTGGCTCCTTCTGAATGACTCTGGCATGATTGCAGCATTAGAACTGCTCTGCGTATACACAGCCAACTGCGCTGCAGCTTGCAGTGCTGTATGTGGTAGTTCAGCTCACGCTGCTTTACCTAGAAATCCTGTGACGAACTCTCTGATGCATGCAGTGATGAAGTTGGCGTCGCAGGTTCCTCCTGATAATACCAGCATCcatgctctttctttctctctgctcgCTAATTTGTCTATCTCCAGAGACTGCAGAGGCCTCCTTCAGAAGAGCAACTTCCTACAGCACTTCCTGTCTCTCCCTATGCCTCGGGTGAGCGGTAAAAGCAGTAaaagcagcacagcagcagtgattCTCTCTCAGTGGCTCCAGCTGCTGCTGAACATCTCTTTTGAGGAAGACGGTCAGCAGATGATCATGAAGATGCGGGGAGCTCTGGAGATGTTGACGGATTTGGCTCAGGGCAAACACGGAGACAAAAAACACACGGCACTGCTCATCCTCCATAACATCTGCTTCTGCTCAGCGAATAAACCTCGAGTCCTCGCCTGTGATAAAGCTGTAGAGCTGCTCGTGTCATGTTTGGAGAGCAGCTCATTAAACGTCCGTGCTCTCGGAGCTTCAGCACTGTGGGCTTTACTGCACAACTATCAGAAGGCAAAGGTGACCCTGAAGTGTCCCTCCATCAGACTGAAAGTGGACGGAGCATACGCACTCACTAAGAAAGGTGCAGAACCAAAAATAGAAGAGAACACAAACATATATTTACTGAAATGCCTTGAACATCTCAGCCGTCTTTTAAACACATAAGTGCCATAGTCTTAATGAATGTTAGTGCAAAAAGTCATGGAAAAtgtgaattaatattttatattacaatttTGTTGTTTCTTATTTCAACATATTTAAAGACACCTGACACTAATGTTATTTAAATCATGGCTTCTGCaatctgaaataaatttttttatagttCACCTGTTTA

Function

GO: NA

KEGG:

id description
K16484 RTTN; rotatin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576995.1 lncRNA upstream 271860 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 851408 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 871342 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 873026 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 943645 13287447 ~ 13290399 (+) True G331468
TU393268 lncRNA downstream 392392 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 649220 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 660089 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 770204 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 815892 15111663 ~ 15112523 (+) False G332334
XM_034298306.1 mRNA upstream 253855 13975240 ~ 13980189 (+) True cbln2b
XM_026937939.2 mRNA upstream 786296 13406164 ~ 13447748 (+) True mtrr
XM_026937943.2 mRNA upstream 837583 13386074 ~ 13396461 (+) True cmbl
XM_026937944.2 mRNA upstream 837583 13386103 ~ 13396461 (+) False cmbl
XM_034298205.1 mRNA upstream 854392 13373814 ~ 13379652 (+) False klhl15
XM_026937910.2 mRNA downstream 1789 14297560 ~ 14309471 (+) False cd226
XM_026937909.2 mRNA downstream 1789 14297560 ~ 14308674 (+) True cd226
XM_026937862.2 mRNA downstream 91190 14386961 ~ 14405762 (+) True crispld1a
XM_026938139.2 mRNA downstream 191199 14486970 ~ 14517787 (+) True jph1a
XM_026937861.2 mRNA downstream 233893 14529664 ~ 14535320 (+) True LOC113541072
trnat-agu_17 other upstream 848770 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 975628 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 1521366 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2077257 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 2485485 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 955864 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 1270404 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2811701 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2811701 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2989311 17285082 ~ 17300011 (+) True G333388

Expression Profile