RNA id: TCONS_00008815


Basic Information

Item Value
RNA id TCONS_00008815
length 775
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_004216
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32150218 ~ 32157526 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttataatctaatgagaattagttggcatgcagatgcaacGTAACTTCAGTTCAACAAAATGCATGAAAgggaacatcaaaataaagtgataacgACTTTTGTTCATATTCAGAATACAAATGTAGATTTTCAACAAAATATAAATGTCTAAAAGTCTGTATTCACTTTAAATGATGAACTCTATATGAACTCTATGTGATTTAATTCAGGTTTTTATCCACATATATACTCTGATGACTTAACGTAAACAGAAGCAGAACCTGCTTTGTGTATGAGAGATCTCCTCGTTAGTTCTTCAGGAAGCTAAAATGTAACATGTGACAAAGGACATTGGTTCTCACATCGTTTACAGTGACCGAATTTGAATACTATAGCTAGTTGATGATTGTAAAAGCCTGGAATTaatcaaataatcatattaaactTCCACAAAAGGTGACTGTGAGCTTTGTGTTTCGTTTTTGTGTCCGTGTCACCGCAGCGACTACAGAGGTCAAACCCAAGAGGTGATGTCATCATAGGGCACGCAGGCGGGCGAGCAAGGCCTCGACGTCGCTGTCACCATTGGATGAGCAAAGCATGGGAGTTTGCTCTTTTTCCTTCTCTCGCTCTTTggctttttctttctctctctcaggcCGGTGGGTCGGCTTGTGGGCTGCAGACGGATGGGGTTCGCTCTCGTAATGAGGCTCCTTGGCAGTGGGTGCTCGTGTCGAGTTTAAATTGATATTCTGCCGCGACCGTGACCTTTGCAGAGATGCCTTCATGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008813 lncRNA downstream 943646 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008812 lncRNA downstream 952115 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008053 lncRNA downstream 1790149 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008040 lncRNA downstream 2193053 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 2233952 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008816 lncRNA upstream 209594 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008817 lncRNA upstream 300998 32457316 ~ 32563702 (-) False XLOC_004218
TCONS_00008818 lncRNA upstream 310866 32467184 ~ 32538409 (-) False XLOC_004218
TCONS_00008073 lncRNA upstream 310866 32467184 ~ 32563722 (-) False XLOC_004218
TCONS_00008475 lncRNA upstream 316465 32472783 ~ 32473383 (-) True XLOC_004219
TCONS_00008072 mRNA downstream 282326 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008070 mRNA downstream 878874 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA downstream 878890 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008068 mRNA downstream 920370 31218956 ~ 31234584 (-) False XLOC_004213
TCONS_00008074 mRNA upstream 419982 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008079 mRNA upstream 1441895 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 1442296 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 1690122 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 1704859 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008067 other downstream 982700 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 1646163 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 1790130 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 1999119 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 2053697 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008075 other upstream 574847 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 1214933 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 1809840 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 2199226 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 2310077 34466395 ~ 34466513 (-) True XLOC_004247

Expression Profile

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