RNA id: XM_034298246.1


Basic Information

Item Value
RNA id XM_034298246.1
length 4429
RNA type mRNA
GC content 0.54
exon number 30
gene id pola1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19439763 ~ 19489383 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGATCTCACGCCTAAACCTGCGTCTAAACCTGCGTCTAAACCTGCGTCTAAACCTGCGTCTAAACCTGCCCCTCCATCCAACCCCAGAAACCCAAGGTGGAGGAACCTGAGGAAGCGTGCGACTCGTTAGATTTTGACGAGGTGGACTTTGATGAGCCGATGGAGCTGGGGAccgagcagcagcagcaggaggaaacGGCGGTTAAGGCGGAGACGGAGACGGAGGCGAAGCCCGGCGTTAAAATGGAGCCGAAAACCGAACCCGAGGACGAGGTGTTGATatcAGGCATGATGGGCGACTCGTGCTGGGGGAAGATGGAGGAGGACGAGGTTGATGAATCTCCCGTGGAGGTGCAGGTGGACTCCAGTCAGCTGCCGATGGTGGAAGGAGCTGATGGAGAAACCGTGTTCCGCTTTTATTGGCTGGACGCTTTCGAGGATCAGTTCAACCGGCCAGGTGTGGTGTATCTGTTCGGGAAGGTGTGGATTGAATCCGCTAAAGCCCACGTCAGCTGCTGCGTGGCCGTGAAAAACATCGAGAGGACGATGTACTTCTTGCCGAGAGAGCGCAAAGTGAACCTGGCGACTGGCGAGGAGACGGACGTTCCTGTCGGAATGATGGACGTCTACCAGGAGTTTAACAGCCTCTcggaaaaatacaaaataatgaagTTCAAGTCCAAGAAAGTCGAGAAGAACTACGCCTTTGAGATTCCGGACGTTCCTACGCAGTGCGAGTACCTGGAAGTGCGATACTCTGCCGAGATGCCCCAGCTGCCGTCCGATCTAAAAGGCTCCACCTTCTCGCATGTCTTTGGTACAAACACCTCCAGCTTGGAGCACTTCCTCCTCAGCAGGAAGATACGAGGACCCTGCTGGCTTGACGTTAAGACCCCTCAGCTGTGCAGCCAGCCGATGAGCTGGTGCAAAGTGGAGGCCATTGCTCTGAGAAGCGACCTGATCTCAGTGATGAAGGACCTGCCTCCTCCTCCGCTCGTCGTCATGTCCATCAGCCTGAAGACCGTTCCCAACCCGAAGACCCACCACAATGAGATCGTGTCTCTGGCTGCTCTTATTCATTACAAGTTTCCTCTGGACAAGGCGCCTCCACGCATCCCGTATCAGACCCACTTCTGTGTGGTGAGCAAACCCACAGACTGCATCTATCCGTATGACTTCAAGGACGCGGTTAAGAAGAAGAATGGGATTGTAGAGATTGCAGCGACAGAACGCACTCTTTTGGGCTTCTTCTTGGCCAAGCTGCACAAGATCGATCCTGACGTTTTGGTGGGTCACGACATCTTGGGCTTTGACCTGGAAGTGCTGCTGCAGAGAATCAACATGTGCAAGGTGCCCTTCTGGTCCAAAATAGGGCGGCTGAGGCGGGCCAACATGCCCAAACTCGGGGGCCGAGGTGGATTCGCGGAGAAGAGCGCCGCCTGTGGCCGTCTCGTGTGTGACGTCGAGATCTCCGCTAAGGAGCTGATTCGCTGTAAGAGTTACCACCTGACCGAGCTGGCAGCGCAGATCCTGAAGACGGAGCGAGCCGTGGTGCCTCCTGAGAACATCAGGAACTTCTACAGTGACTCTCCTCACCTGCTCTACCTGTTGGAACTCACCTGGATGGACGCCAAGCTCATTCTGCAGATCATGTGTGAGCTCAACGTGCTTCCTCTGGCGCTTCAGATCACCAACATCGCCGGCAACGTCCTGTCTCGGACGCTGATGGGCGGACGCTCGGAGAGGAACGAGTACCTGCTGCTTCACGCCTTCCACGAGAAGAACTACATCGTTCCAGACAAGCAGTTCATGAAGAAACATCAACATGAACCTggtgaggatgatgatgtaGATGCAGGGAAGAGCAAGTCTGGGAAGGTGAGGAAGAAGGCTGCGTATGCTGGAGGTCTGGTCCTGGAACCTAAAATTGgtttttaTGATAAGTTCATTCTGCTGCTGGACTTCAACAGTCtgtatccatccatcatccaggAGTTTAACATCTGCTTCACTACGGTTCAGCGAGAGGCGTCCAGCTCACGCAAAAagactgagGACGATGACGCGGATGAGATTCCGGAGCTTCCGGACCCGGATCTGGAGATGGGCGTTCTTCCGAAGGAGATCCGTAAGCTGGTGGAGCGCAGGCGGCAGGTCAAACAGCTGATGAAGCAGCCTGATCTGAACCCTGACCTTTACCTGCAGtatGATATCAGACAGAAGGCTCTGAAACTCACCGCTAACAGCATGTACGGGTGTCTGGGCTTCTCCTACAGCCGCTTCTACGCCAAACCTCTGGCTGCTCTGGTCACACACAAAGGTAGAGAGATCCTAATGCACACCAAAGACATGGTTCAGAAGATGAATCTGGACGTGATTTACGGAGACACCGACTCCATCATGATCAACACCAACAGCTCCAACCTGGACGAGGTCTTCAAACTGGGCAACAAGgtGAAGAGTGAGGTGAATAAACTGTACCGGCTGCTGGAGCTCGACATCGACGGCGTGTTTAAGtccctgctgctgctgaagaagaagaagtacgCCGCTCTGATGGTGGAGCCGCAGGGAGACGGTCGCTACACCACCAAGCAGGAGCTGAAAGGCCTGGACATCGTGCGCAGGGACTGGTGCGACCTCGCCAAGGAGTGCGGCAACTAcgtgattggtcagattttgTCAGACCAGAACCGGGACACGATCCTGGAGAACATCCAGCAGCATCTGATCGAGGTTGGTGAGAAGGTGGCCAACGGCAGCGTCCCTCTCAACATGTTCGAGATCCACAAGgccctGACGAAGGACCCTCAGGACTACCCGGATAAGAAGAGTCTCCCTCATGTGCATGTGGCTCTGTGGATCAACTCTCAAGGAGGCCGGAAGGTCAAAGCAGGAGACACCGTGTCCTACATCATCTGTCAGGACGGCTCGAATCTGGCAGCCAGCCAAAGAGCGTACGCTCCAGAGCAGCTCCAGAAGCAGCCGGGTCTGAGCCTGGACACGCAGTACTACCTCTCGCAGCAGGTTCACCCCGTGGTGGGGCGAATCTGTGAGCCCATCGAGGGCATCGATGCCGTCCTGATCGCCACCTGGCTCGgtctgGACCCGGGGCAGTTCCGGGCGCAGCAGCGGCAGCAGCGAGAGGAGGAGTCGGACGGTTTCCTGGGCGTCCCGGCTCAGCTGACAGACGAAGAGCGGTACCGCGATTGCGAGAGGTTCTCCTTCACCTGTCCCGAGTGCGGCACGGAGAACATCTACGACAGCGTGTTTGAGGGAGCGGGGAGCGTGATGGAACCGAGTCTGAAGCGCTGCTGTCACGTCCCCTGTAACGCGAGCCCGCTTCATCACACGGTTCAAATCAGCAACAAACTGCTACTGGACATCCGGAGACACATCCGCAAGTACTACAGCggatGGCTGCTGTGCGAGGACCAGGCGTGTGGAAACCGGACACGTCGTCTCCCCATTGCGTTCTCACGTTCAGGACCGATCTGTCCCGTCTGCTGCAAGTCCACCCTCAAACCTGAGTATTCCGAGAAGGCGCTCTACAACCAGCTGAGCTTCTACAGGTTCGTCTTTGATTGGGAATACGCCGTCACCAAAGTCCTGCAGGGAGACGAGAAAATGAAATTCAAGAAATACTACAACGAAGAGAGAGAAGTGTATAAGAAGCTGAAGGCGGTGGTGGACCGCGTCCTGGCGTCCAGCAGCTACTCCGAAGTCAACCTCGCCAAGCTCTTCCAGGCCTTTACGTCGTTAAAGTAATGTTTTATTAGCGTAGCGTCTTTCAGGTGATTGTCGAACCAGGATTAGTTTCCGTACACATGTATATACCTGTGATGTGTGcgattctgatttttttttttttgttgtattttttgaaCAACCTGTAGTGCTTACCTTATATCACCTGTATTGCTGGTGGTCGTGATGATTGCCTCGCTCGTCAAGAGCTTCCTTGATTGGCTGCTTGTCACTCAACGTCTTTCATCATGTCCATTTAGTAGCCCTGTGTCCTGGTCTTTAATCGATCCCAATTCGGTGGGAAAATGGACATGAAGAGAGACTAAAGACCCATAAAAACACCAGCACACTCAACCCaacctctccctctccccctctccccctctcctcctctcctcctcttcgtTCCTCCACACACAACGAGGGAACAATCAGAGGTAATAACTTCTCTCCACCACCACAGGTCCTTGACTGCGTAGCAATTAGCCAATGATACAGGCTTGGTCTGGTGATTGGAGGAGCTGGGACAGATTGGACGCTCGTGTTGGACATTACCTctacttttatactttttttacatgttgattttatttgttgttgttgatctGAGTGAATGTCTGATCACGTCTctgttaaatgattttatactCCAAGTTAAATAAAGTGATTTACGAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396814 lncRNA downstream 11505 19391964 ~ 19428258 (-) True G335105
XR_004576978.1 lncRNA downstream 23691 19414228 ~ 19416072 (-) True LOC117595800
TU396812 lncRNA downstream 34874 19359557 ~ 19404889 (-) True G335103
TU396808 lncRNA downstream 79025 19317859 ~ 19360738 (-) True G335099
XR_004576971.1 lncRNA downstream 364497 19070338 ~ 19075266 (-) True LOC117595792
TU396813 lncRNA upstream 17705 19507088 ~ 19518309 (-) False pdk3a
TU396859 lncRNA upstream 61657 19551040 ~ 19551530 (-) True G335149
TU396860 lncRNA upstream 71595 19560978 ~ 19564462 (-) True G335150
TU396959 lncRNA upstream 283470 19772853 ~ 19773057 (-) True G335230
TU396961 lncRNA upstream 299200 19788583 ~ 19789058 (-) True G335232
XM_026938080.2 mRNA downstream 28548 19395899 ~ 19411215 (-) True hgd
XM_034297940.1 mRNA downstream 48230 19384922 ~ 19391533 (-) False ropn1l
XM_026937920.2 mRNA downstream 48231 19384926 ~ 19391532 (-) False ropn1l
XM_026937921.2 mRNA downstream 48235 19382488 ~ 19391528 (-) True ropn1l
XM_026937911.2 mRNA downstream 61890 19363399 ~ 19377873 (-) True ankrd33ba
XM_034298016.1 mRNA upstream 18884 19508267 ~ 19521331 (-) True pdk3a
XM_026937828.2 mRNA upstream 33232 19522615 ~ 19531363 (-) True slc51a
XM_034298280.1 mRNA upstream 51400 19540783 ~ 19554793 (-) False zdhhc20b
XM_034298279.1 mRNA upstream 51400 19540783 ~ 19554793 (-) True zdhhc20b
XM_034298114.1 mRNA upstream 65758 19555141 ~ 19579031 (-) True nup58
TU395862 other downstream 919558 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 996768 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1060029 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 1060642 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 1512928 17925075 ~ 17926835 (-) False zmp:0000000991
TU396861 other upstream 86725 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 111344 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 690029 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 753137 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 757183 20246566 ~ 20248461 (-) False otos

Expression Profile