RNA id: XM_034298261.1


Basic Information

Item Value
RNA id XM_034298261.1
length 3217
RNA type mRNA
GC content 0.43
exon number 19
gene id si:ch73-173p19.2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15251635 ~ 15265895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACCAAAAATTGAATCATTTAGTGCAAATTCAAGTGAAGAGATGCATGTGTGTACTAACAAAGCTCATCttcttttaaattataaatagaaCAAGTGAATTATTTGAATCACACCCAATGAATCAGTAGATACATCAAATACTGAATCATTACCTTTAGCAAACGATCACTTCATAAGTGATTCGAGAATAGATTTGATCACATTGTTGTCTTGGTATCTTAGCTACAGGACCTCAGCAATGGTTGTGTCACTATTAATGAATGTCTCTATTGATCAGTGTCCGTATCGATCAGGGTTTTAATTGATTGTCTGTATCGATTGAAACACACAATATTCTAAAAtctctcatctcacacacacatttaaaacacagactgagagaagtgAGTAGGAACTGAGTGTCTGAAGGCGGATAGTGCACTTTTattgtgaattttttaaaagttgaagTTAAAAGCAGCAGCAGTATGGGTTTGCTATTCCGCAGTGAGGAGATGTGTTTACTGCAGCTCTTCTTTCAAACCGAATCAGCACTCAGCTGTATTAATGAGCTTGGCCTTCTGGGACTTGTCGAGTTCAGAGATctAAACCCAGAAATGAGTTTGTCTCAGAGGAGATTTGTAAACGAGGTGAAGAAGTGTGAGGAAATCGAGAGAATCATCAAGTTTTTGGAAGGTGAAATATTGCGATGTAATATTCCTATCGCTACTGGATCACACAGCAAAGAAACTCAGTGTAGCAGAGACACACTGGAGCTTGAGtgtgaggtAAAAGAACTGGAACAGGAGCTGAAGGAGATCAACTGTAATCAAACAACACTGAAGAGGAATCTGACAGAGCTGCTAGAGATCAGTGCACTGCTCGGCGTCATCCATGACTTCTTccaggagGCTGAGATGCAGCTGTCCTGCACTGATCTTCAGTCTGACGGACCGGACATCGCTCATCGCCGAAACAGCATCAGCACCATCACAGCTCCTAAactgagGTTTATTGCCGGTGTGATTAAACACGATCGGTTTCCTGCATTTGAGAAAGTCCTGTGGCGTCTTTTTCATGAGAATTTTCTGCTGCGCCGTGCAGAGATTCAACAGCAACCAGAGAACAGCATAGTGAAGAAAGACGCCTTCATTATCTGTGTGCAGGGTGAGAAGGTGCAgggaaaaatcagaaaaatatgCGAAGGGTTTAGTGTCAGTTTGTGCCCGTGCCCGAACACTTTACACGCCCAAGAGGAGATGAAGTGTAACATACAGACACGCATCAAAGAACTGCAAATGATTTTGCACCAGTGTGAAGAATTCTGCACTGCAGTTTTGAATAAAGCAGCAAACAGAGTTACAGACTGGTCCATCCAAGTGCACAAGATGAAGTCCATCTATCACACACTCAACCTGTGCAACATCGAtatcacacacagactcaccaTCGCAGAGATATGGTGTCCGGTGTTAGATCTCGGCCATGTCCAGCGTGCGCTCACTAAAGCTGCTgagcaCGCTGGTTCCAGTGTCAGACCTGTCCTAAATCGCATCCAGAGCCATGATACGCCACCCACATATAACAGGATGAACCGTTTCACTGCAGGCTTTCAGCAGATTGTCGATACATACGGTGTGAACAGTTATCAGGAGATTAATCCAGCTCCATATACCATGGTGACGTTCCCGTTTCTGTTCGCTGTAATGTTCGGTGACTGTGGTCACGGACTCATAATGACGTTGATTGCTGGCTGGATCATCATGAATGAGCAGAAATTAAACCAGCAGAAGAATGAGATCGTGTCCATGCTGGTGGGCGGGCGCTACATCGTCCTGCTGATGGGCCTTTTCTCCATCTACACTGGTCTCATTTATAATGACTGCTTCTCCAAATCCTTCAACATCTTCGGCTCGTCATGGAGCGTCAGAGCCATGTTCTGGCCCAGTGGACCCTGGAATAATCAAACCCTGCACAGTTCGAATCATCTCCATTTGGACCCTGCAGTGCCAGGAGTTTACTCTGGAACTCCGTACATGCTTGGCATCGACCCAGTGTGGAATATTGCATCAAATAAGCTCTCCTTCCTAAACTCCTATAAGATGAAGATGGCAGTTATAATTGGAGTTTGTCACATGACCTTCGGTCTGACGCTCAGTGTAGTCAACTACATACATTTCAGAAATGTCCAAAACGTTTTGCTGCGCTTCGTGCCAGAGCTCATCttcttgctgtctctcttcGGTTATCTCgtcttcctcatcctcttcaaGTGGTGCATGGGCGTGCAGTGTGACAGCAGTatcctcctcatcttcatcaACATGATGTTTTTCAACTATCAGGCTGACGAGAAATTCATCTACAGTGGACAGAAAGCTGTGCAGATATTCCTGGTGGTCCAGGCTCTGCTCATGGTCCCTATAATGCTGCTAATAAAACCCCTGCTCACTTACAGAAGGCAAGAGAAGATCACAGACCAGGTCAGTCTGAGtgacgtgtttgtgtgtgaagcGATCCACACTATAGAACACTGCCTCGGCTGCGTCTCCAATACAGCGTCTTATCTGCGGCTGTGGGCTCTCAGCCTCGCCCACTCAgagTTATCTGAGGTGTTATGGCGGATGCTGATGTGCATCGCTCTGCGCTCTGGTTCATCGCTCATGCTCACGCTGATCTTCTGCTGCTTTGTGTTGCTAAGTGTGTCAGTCCTAATAGTCATGGAGGGACTGTCTGCATTCCTGCATGCTCTACGTCTGCACTGGGTAGAATTTCAGAGCAAGTTTTATAAAGGAGCCGGATTTAAATTTACACCGTTGTCCTTCAAGTCTAAAGAAACACAGCAATGGTAAAGTATTAAATTTGATAACAATAATGAAATTGTCAGTGTACACATAtgtaacacatacagtatattacaataatgtattacattaatatatgaTACATTAACCCAAAGAGCCTGAATACAACAACATGTGTACTGTATAACTCTTTACTCTAACAAGTAACTGTAGTAACCTTGATGGCAGGGTGTATGCAGATGTTAGCAAAGCTAGACGCTTAGTTCTGCTTTCCTGTGGATTGTATACAGTAGCTGTAGAGAACAATAAAtagtatttctctttttcttttaaataaaagtaaatgtgttaaatgctAAACAgtggaaatgtaaatgaatgtcaGCTGCATGTACACTGCTTATTAgttcaataaaatattacttCTCTGTG

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG:

id description
K02123 ATPVI, ntpI, atpI; V/A-type H+/Na+-transporting ATPase subunit I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393555 lncRNA upstream 49331 15201817 ~ 15202305 (+) True G332348
TU393531 lncRNA upstream 138122 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA upstream 139113 15111663 ~ 15112523 (+) False G332334
TU393440 lncRNA upstream 295569 14955860 ~ 14956067 (+) True G332248
TU393426 lncRNA upstream 306424 14944991 ~ 14945212 (+) True G332238
TU393773 lncRNA downstream 62719 15328614 ~ 15332432 (+) True G332527
XR_003404151.2 lncRNA downstream 147977 15413872 ~ 15418923 (+) True LOC113541145
XR_004576951.1 lncRNA downstream 304968 15570863 ~ 15579798 (+) True LOC113541248
XR_003404160.2 lncRNA downstream 304968 15570863 ~ 15571817 (+) False LOC113541248
TU393930 lncRNA downstream 326193 15592088 ~ 15617234 (+) True G332650
XM_034298109.1 mRNA upstream 27045 15134353 ~ 15224591 (+) False stau2
XM_026938099.2 mRNA upstream 27045 15135024 ~ 15224591 (+) False stau2
XM_034298108.1 mRNA upstream 27045 15137731 ~ 15224591 (+) True stau2
XM_034297859.1 mRNA upstream 122033 15121226 ~ 15129603 (+) False flj11011l
XM_026937852.2 mRNA upstream 122033 15122477 ~ 15129603 (+) False flj11011l
XM_026937952.2 mRNA downstream 117091 15382986 ~ 15397527 (+) True si:ch73-173p19.1
XM_034297849.1 mRNA downstream 321407 15587302 ~ 15614891 (+) False tpk1
XM_026937807.2 mRNA downstream 321776 15587671 ~ 15614891 (+) False tpk1
XM_026937805.2 mRNA downstream 321910 15587805 ~ 15614891 (+) True tpk1
XM_026937806.2 mRNA downstream 321927 15587822 ~ 15614891 (+) False tpk1
trnat-agu_17 other upstream 1866362 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1993220 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2538958 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 3094849 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 3503077 11738158 ~ 11748559 (+) True ankha
TU393912 other downstream 300280 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 1841577 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1841577 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2019187 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 2021265 17287160 ~ 17302004 (+) False G333388

Expression Profile