RNA id: XM_034298281.1


Basic Information

Item Value
RNA id XM_034298281.1
length 2341
RNA type mRNA
GC content 0.47
exon number 10
gene id dhdds
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4378023 ~ 4389461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTATTTCGACACCTTGTCACACTGTCGCTTGTTAAAATGTTTCCTGGTGTCGGGTGTCACACAGACCTTTCTGGCCTCTTGAGCCATTCAGCTCACTGGGACATGTCTGTTAGTGAATGATCAGCTTCTCCATGCTGAGCAAACTGTGCCTTCTGCTAGGTTTTTTAAGATGTCTTGGATCCGGGAAGGAAAACTAAGCCTTCTTGAAAGGCTCTCTGCCAACATCTTAAAGGCAGGACCGATGCCCAGACACGTGGCCTTCATTATGGACGGGAACAGACGTTATGCACGTAAGAGACACGTGGAAAGACAGGAGGGCCACACTCAGGGCTTCGACAAGCTGGCTGAAACGCTTCACTGGTGCCTAAACCTGGGCATCCACGAGGTAACGGTGTATGCCTTCAGCATAGAGAACTTCAAACGTTCCAAAGAGGAAGTGGACGGCCTGATGGAGCTGGCCAAAGAGAAGTTCCTCCGGCTGCTTGAAGAGCAAGAGAACCTTGAGAAGCACGGTGTGTGTATTCGGGTGTTGGGAGACCTCAACTTACTGCCTGAAGATCTCCAGCGGCTCATTGCCAAAGCCGTGGTTTCGACTAAAGCACACAACAAGTGTTTTTTGAATGTTTGCTTTGCGTATACCTCAAGATATGAAATCGCAAATGCAGTCAGAGAGATGGCTTGGGGAGCCGAGCAGGGCCTCATCAAGTCCAGTGACGTATCAGAAGCTCTCTTGAGTCAGTGCCTGTACACCAGCAGCTCTCCCAACCCTGATCTCCTGATTCGCACTTCTGGAGAGGTGCGCCTCAGCGACTTCCTGCTCTGGCAGACGTCCCACTCTTGCATAGTGTTCCAGTCCATCCTGTGGCCAGAATACTCCTTCTGGAACCTCTGCGAGGCGGTTTTACAGTACCAGCTGAATTATCGCTCTATCCAGAAAGCGCAGGAGCTGCGCAGAGAGGCGGAAGCGGCGCAGCAGCTGGAGTCGGATCGCTTGTGTGTAGCCGAACTTCTTCAGCAGGGTGGAAATGGCAAGCCCATGGATGCCCGCTCCCGTCATGCAGCACTGCTGAGCTACACGGCCAACCGAGAGGAAAGAGTGAGTCGCTTCCTCAGCGCCCTTCAGCAGAAAAGAGACACTTTCTTCGAGCATATGAGCAGCCCAACTGCTGTTGCTTAAGCttctgttgttaaaaatgatCCAGTCCTAGAGCGCTTTAACTGCTTCCAACACGTCTGATTCAGTTTGCGGGCTAATTCCGAACCCCTTAATGAGTTTAATCGGTTATGTCAGATCAGGGAAGCACTGTGTAGGGCTGTGGTGCTGGATACAACATGGCTGCCTGTGGACGTGGTTCTAAAGCCAAGAGCAtgaaaagatttttatatttactaatttgtatATAGTTTCGATGATCAGGGTGGTGTACCCCGTTTTATGGGGAAATGAGCTATTTATAGTTGTCTCAAAGATGGTTGTCAACACTAGATACGTGAAACTATTTCAACGTCTATTTCAACGTCTTTGAGGTGTGTGCATTACCAAATGTGTAGCTCTAAAATGTCATTCTTGAGCTGTCTCTCAAATCACAGACTAGAACATACTATtctagattatttttaattatcataACCGTCCAGGTTGTTTAAGCTGAGgaatatgaacaaaatgtagtacaggttttaaaaaaatggataatGTAGTGTATTTGTAGTGTGCAGCAATTTTCTTTTGCATGACCTATCCCATCATGCACCACAGAAGGAGAAGGACTCGCAGCACCATGATAACAACATGGCCACAAATGACCGCTCTTCATCGATGGTGCAGCTTTTGTCTTTGTCTCAAAACTGCTAGAAGAACATTCTGTAATttctgtggggggaaaaaacccttGACAAGCCTTTTCTTTGCCCCCCAACCCACTTCATCCCTGTGTTGAGATTAATATAACTCTTAGAGATATAACTTTTAGAGATTACATAAAACTCTTGAACTGCCTTTCAAGAAACATGGGCATGGTTGGGCGTCCAAGAGTGCTTAATTGGTCATGGTTGGGAGGGATGGCTTACTATCTCTCAgctgtcaatcagagcgacgCGAGCCAATTGTAGGCGTCTGTGAGCTCTAGCATGCAGAAGAGGACAGATGGCACTTTCGTCCGAATGTGTtccactgccctgtgatgcagcatgagcagcagtttgaaaagatgcagtggttTCACATGTGTAAGAGGAAGTATGTGTTATCTTTCGCAGTCCCTGGTTGATAGATATCTGGCAAATTACCAAATTATGAAAAAGATGGGGTGAAAaaccaaagaagaaaaagaaaaatg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386648 lncRNA upstream 18905 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA upstream 26176 4348781 ~ 4351847 (+) True G326281
TU386524 lncRNA upstream 405021 3967532 ~ 3973002 (+) True G326193
TU386508 lncRNA upstream 431890 3945382 ~ 3946133 (+) True G326178
TU386457 lncRNA upstream 497082 3880677 ~ 3880941 (+) True G326131
TU386679 lncRNA downstream 2123 4391584 ~ 4394784 (+) False hmgn2
TU386681 lncRNA downstream 9217 4398678 ~ 4406561 (+) False LOC113532991
XR_004576935.1 lncRNA downstream 77047 4466508 ~ 4468850 (+) True LOC117595758
TU386730 lncRNA downstream 152966 4542427 ~ 4542695 (+) True G326359
TU386740 lncRNA downstream 190089 4579550 ~ 4587322 (+) True G326369
XM_026924919.2 mRNA upstream 74493 4294369 ~ 4303530 (+) False si:dkeyp-97a10.2
XM_026924920.2 mRNA upstream 74494 4294370 ~ 4303529 (+) True si:dkeyp-97a10.2
XM_034297819.1 mRNA upstream 89793 4283288 ~ 4288230 (+) False LOC113532664
XM_034297820.1 mRNA upstream 89793 4283659 ~ 4288230 (+) True LOC113532664
XM_026924156.2 mRNA upstream 89793 4284199 ~ 4288230 (+) False LOC113532664
XM_026923895.2 mRNA downstream 2059 4391520 ~ 4394784 (+) True hmgn2
XM_026923894.2 mRNA downstream 2068 4391529 ~ 4394778 (+) False hmgn2
XM_034298293.1 mRNA downstream 9198 4398659 ~ 4434251 (+) False LOC113532991
XM_034298292.1 mRNA downstream 9205 4398666 ~ 4434251 (+) True LOC113532991
XM_026924760.2 mRNA downstream 37125 4426586 ~ 4434251 (+) False LOC113532991
TU386582 other upstream 364485 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 1808284 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2163724 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2163762 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2233512 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 531519 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 535325 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 942807 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3512331 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3998726 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile