RNA id: XM_034298295.1


Basic Information

Item Value
RNA id XM_034298295.1
length 2467
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC113525236
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 21010872 ~ 21024050 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagtgtgtgtgtgagtgagtgtaacagctctggttttgttttgtgctgactttgtgtgtgttttatgttttaaggAAGAATCAATGTAGTGGATCTGCAGAAGatcATTAACGTGGATCTGGTCCATGTGGAGAGCCGAGCGAATGAAGTGGCCAAATCAGAGAGAGGAAATCGGATCATTCTGGGGCAACTGATTAATgaACATTACCTGGAACAGCTGTGTGAGGAGGTGAATGATAAACTGCAAGAGGCTGGACAGGTGAACATCACTGAGCTCAGCAAAACACAGCAATTACCTGCTGATTTCCTTACACAGgagcTCAGTGCGAGGGTAGGCCGGATGATTGATGGTCACATGGATCAGTTCAGTGGACTGATCTTCACCCAGAACTTTATCAACAGACAGAAAGCAAAAATACGAGGATTATTCAGTTCTATcaccagGCCGACTCCAGTGAATAACCTGGTTGGTCAGTATGGTTTACAAGACAATCTCTTATACTctcTTCTGGAGGAGTTGGTGAACTCAGGCCGTGTCCTTGGCTCGGTAGTTGGAGGTCGTCAGGATAAAGCCGTGTTTGTTCCTGATGTTTACTGCAGAGCGCAGAATGCCTGGGTCGAGTCCTTCCTGACACACAACGCCTACCTTGAGTTTGAGTCTCTGTCCCGGTTGGGAATTCCTGATCCAGTGAACTACATTAAGAAGCGTTTTAAGGACAGGAAGCTGTTGTTCCTGCAATCGGTGTGTGTGGAAGCAGCCATATTGGATCAGCTGGAGGCCTCAGTGGAGGAAGCCGTCAACTCTGAAACCTGGATCGATTTGCAGCTGCTGTTGCCAAGCTGCCTCTCATTGGACGATTCAGCGACGTTGATAAGTCATGTGATCCACTCGGTGCATGCTCAGTCCAGTGCTCGGGTTCTTGGCACTGCTGTCGTCAGCGAGAAGTTCGTTAGCAGCTGCCTGGCGCTTTTCGATGACATGATGCAGCAGAAAGCTCAGACGGAAGTGAAGAGTGACCCTGTACTGTTATTAACAGAGGATGATGTGAAACTGGCACCAGTGATGGCCGAGAGCTCGAGCGCTAAACGAGACAAACGAGAGGAACGCAGGAAGAAAGCGACAGagggCAGTGGCAGTGTGAGAGCAGGCGGAGGAGGAAATGCCAGAGAGATCAAAACTCGAAAAACCAAGAAGAAGAacaggagagaagaagagagtgaTGATGAGACTGCAACTAcacaaagtaagcCTGCAGAGCCGGAGTTCCTGTCAGTTCAGGAGATTGTGGAGGTGTTAGAGAAGCGAGTGTGTGACTGTCCTGAGGAAACGCTGGAGCTCATTGCACATGAGCTTGTCAGGCCTTTATCACGGGCATACAAGGAGGTGGTGCGTTCAGTTTTCCTGTCCTCCACTTCTGCCTCCACCTCAGCAGGGAAACGCAGACACACGGCTAAAGAGCTGCAggaggaaattaacactttgtACGCTAATGTTCGAGCGCTAGAGCGGGGGACCAAACACTTCTCAGatgatGTTCAACTCCACATGGTGAAACACATCCTGAAATCAGTCTGTTCTGATCTAACCAATGCGATGATCAGCTTCTTGTCAGATGATCACAAGATCACCATGGACAATACCAACCCCATCACTGCTGAGatgaggatgaagattCTGGCAAAGCTCCCTGATGAGATTAAAGCTCCTCTGATGAAACTGAACAGCAGCCTGAATGGAAGAAGCATTGAGGAATTCCTCTGCAACGTGGAAGCTGCTGCTGAGGAGTGTGGCATTATGCTTAAGAAAGGagacaagaaaaaagagaaacagGTTCTCTCCATACATAAACACTCTCTGATGGAGCAGTTACAGGCGGCGGTTGACGAGGCGCTTGTTCTGCATCTTACCGTTTTACTGCTatttcagcaacacacacactgcatgctgCTTGCTCCGGGACGGTGTGTGTCAAGCATCATATACACACTGCAGAGTAAACTCCCAcaggatcaGTATGAGCTGTTGATGCAGTATCACACTCTGGTGGTGAAGCGGTTGGTGGGGAAGAAAGCCGAGCAGACGAGTGGAGAGAGTGAAGGATCAGCTGAAGAACTGAACGAGCTAAAGAATCTCACTAATGACGTTAAAGAGCTCGTCTTCTCACCCAGGAAAACCTCCACCTCAGACCAATGAAATGGAAGAAGGGGCGGAGCCAGTGGGTGGACAAGCGTAAAAGAGGGAGGTGGAGACCGGGGATGGACGAGAGGGCATGGCTGAGGGCGTAGACATGAACAACAATGACATGGATGAGATTTTTCTGAAAGAATGTAATGAACCCTAGAGGAGTGTTAACGTGTAGCCGCTCAGTTGTGTGATCACATGTATATTCATCACATTTCATTGTTCTACACtgattattgtgttattatctGATCTTGAGgattaaacacaaaaagaaaatctg

Function

GO:

id name namespace
GO:0071569 protein ufmylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0071568 UFM1 transferase activity molecular_function

KEGG:

id description
K22755 UFL1; E3 UFM1-protein ligase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397714 lncRNA upstream 102405 20908233 ~ 20908467 (+) True G335856
TU397704 lncRNA upstream 117488 20794471 ~ 20893384 (+) True G335846
TU397705 lncRNA upstream 124723 20885870 ~ 20886149 (+) True G335847
TU397703 lncRNA upstream 180989 20794471 ~ 20829883 (+) False G335846
TU397702 lncRNA upstream 230321 20780184 ~ 20780551 (+) True G335845
XM_026912067.2 mRNA upstream 246499 20744749 ~ 20764373 (+) False vipr2
XM_034298021.1 mRNA upstream 284767 20617744 ~ 20726105 (+) False dip2ca
XR_003402672.2 other upstream 246499 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other upstream 246499 20744749 ~ 20764373 (+) False vipr2
TU397368 other upstream 735181 20274120 ~ 20275691 (+) False lrrc34
TU397154 other upstream 847766 20160400 ~ 20163106 (+) False ccl20b
TU396960 other upstream 1221814 19788583 ~ 19789058 (+) True G335231

Expression Profile