RNA id: XM_034298298.1


Basic Information

Item Value
RNA id XM_034298298.1
length 1749
RNA type mRNA
GC content 0.53
exon number 14
gene id ppox
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 469956 ~ 483298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACCGCTCAAATACAACCGCGAGAGAAACGCGGAAGTGCCTGGCTTTAAAAGTGAAGATTTTTCAGGCTGGAGGTTTTTGCTTTTACGCTCTGATTTATGACCACAAACACCGGTgtgtgtgtgtgtggggaagtgtgtgtgaatgcagaaGTGTGTAGCTGTTCTTGGAGGGGGGATCAGCGGTCTTTCAGCCTGCTATTACCTCAGCAAAACCTCCAATGTCTCCAAgGTGGTGCTGTTGGAGGCGACGGGGAGGTTTGGAGGGTGGATAAACACTACTCGTAGGGAGGATGGAGCTGTATTTGAACACGGCCCGAGAGGAGTCCGACCGGCCGGAGCAGTGGGGAGAAACACACTAAACATGCTGTCTGATTTGGGTCTGGAGCGTGAGATCCTGCCGGTTCCTCATGATCACGTGGCCTCCAAGAACCGTTTCCTGTACGTGAATGGAGAGTTACACAAACTGCCCTCCAGCATCAGtGGAGTGGTGAAAACGGTGCCTCCGTTTTCCCGTCCCATCATCCTCAGCGTGATGAAGGAGGTCCTGGTGAGGAAGGGGAAGCAGGAGGACGAGTCCGTGCACTCGTTCGTGTCCAGGAGATTGGGCTCTGAGttagcAGACATAGCGATGGACTGTCTGTGTCGTGGAGTGTTTGCGGGAGACAGCAGGAAGCTGAGTGTGCGCTCGTGTTTCCCGCCGCTCCACAGAGCCGAACAGGACTGGGGCTCCGTCCTGCTGGGCATGCTCTTCGGAGGAGAGAAGGCGGGTACAGGCGGCACGTCGGCGCTGGCACAGCGGGCGAAGGCGGAGTCGTGGGCGCAGTGGTCTCTGACAGACGGGATGCAGACTCTCCCTGACGCCCTGCAGGAGGCGCTGAGGGGGCGTGAGCGAGTGGAGATCCATCACAGCGCCCCCGTCAGGTCTCTGAGCTACACTGCGGGCGGCTGGGAGATTAAACAGGAGGACGGAGCAACATTAAAAGCTGATCATGTGATTTCTGCTCTACCTGcttcagTGTTGGCCTCATTACTGCCCCCTGCTGCCAGATCACTGTCACATCAGCTGTGTGAGATAAACTCTGTGAGCGTCGGGGTGGTGAACCTGGAGTACGAGGGATCTGTGTTACCTGTAACGggttttGGACACTTGATCCCTTCGTCAGAGGACAGAGGTCTGTTAGGGATCGTGTACGACTCGGTTCTGTTTCCACAACACAACCGGAGAGGAGAACCCACAACCAGAAtgacagtgATGATGGGAGGTGCTTGGTTTGAAGAGACATTAGGTGGTCCAGATGAGGTGAAGGTTGAGGTGCTGTTGGATCGAGCGGTCCAGGCCGTGAGGTCGCACCTGaacattacatcatcacctGTGTGGAGTAAAGCTGCTGTCCTGAAGaacTGCATTCCACAGTATCACCTGGGACACTGGAAGCGACTCGAGGCGATGAGGCGGTACATCAGCGATCACGCTCTTCCACTCACGCTGACTGGAGCCTCATTTGACGGTGTCTCTGTTAATGATGTCATATTTAGTGGACGGACAGCAGCAGAGGGGCTTGTGGGAAAAATCTGAAGCGTAATAAGTTGATTAATAAACCATATCTCAGTAACACTGTAGAACCTCCACTGGGCTTCAGGTATTTCCTTTGTGATGAATGTAGAAGCTTCAAATCTGACCAGTGTGACTCATTCAGCTATTTttacaaatgaaattttatttaataaagctaTATAATTGAGTATA

Function

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383986 lncRNA upstream 23850 444777 ~ 446125 (+) True G324116
TU383939 lncRNA upstream 32165 365488 ~ 437810 (+) False G324083
TU383937 lncRNA upstream 32165 436049 ~ 437810 (+) True G324083
TU383950 lncRNA upstream 108910 359123 ~ 361065 (+) True G324089
TU383931 lncRNA upstream 137174 331923 ~ 332801 (+) True G324082
TU384039 lncRNA downstream 60570 543868 ~ 548283 (+) True G324139
TU384040 lncRNA downstream 60570 543868 ~ 548283 (+) False G324139
TU384041 lncRNA downstream 61368 544666 ~ 548283 (+) False G324139
TU384043 lncRNA downstream 69425 552723 ~ 557118 (+) True G324140
TU384045 lncRNA downstream 72499 555797 ~ 556519 (+) True G324142
XM_034297821.1 mRNA upstream 3352 460213 ~ 466623 (+) True LOC113524801
XM_034297869.1 mRNA upstream 12996 455516 ~ 456979 (+) True LOC117595771
XM_034297870.1 mRNA upstream 12996 455576 ~ 456979 (+) False LOC117595771
XM_034298255.1 mRNA upstream 119426 333684 ~ 350549 (+) True dpy19l1l
XM_034298133.1 mRNA upstream 148792 301880 ~ 321183 (+) True tbx20
XM_026911132.2 mRNA downstream 22016 505314 ~ 524157 (+) True zgc:162160
XM_026911136.2 mRNA downstream 167620 650918 ~ 657392 (+) True etsrp
XM_026911162.2 mRNA downstream 175183 658481 ~ 663976 (+) True pycard
XM_026911161.2 mRNA downstream 175183 658481 ~ 663976 (+) False pycard
XM_026911138.2 mRNA downstream 191570 674868 ~ 680370 (+) True LOC113524791
TU383992 other upstream 3350 454910 ~ 466625 (+) True G324120
TU383993 other upstream 3350 454910 ~ 466625 (+) False G324120
TU383942 other upstream 27688 438391 ~ 442287 (+) True G324085
TU383914 other upstream 57866 354781 ~ 412109 (+) True G324067
TU383913 other upstream 148201 315350 ~ 321774 (+) False tbx20
TU384046 other downstream 74117 557415 ~ 558139 (+) True G324143
TU384003 other downstream 122788 606086 ~ 606914 (+) False G324123
TU384064 other downstream 124314 607612 ~ 610009 (+) False G324161
TU384116 other downstream 262375 745673 ~ 748475 (+) True G324206
XR_004576966.1 other downstream 290991 774289 ~ 806528 (+) True psmc4

Expression Profile