RNA id: XM_034298299.1


Basic Information

Item Value
RNA id XM_034298299.1
length 10037
RNA type mRNA
GC content 0.47
exon number 9
gene id zfhx4
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18732960 ~ 18788585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCACCTACAACCACGCCGCCCCCGTCGCCGGGTGGCGCCCTGAGCAGCTGCAGTGCACCCTCGCCGTCCAAGCCAAAGCAGAAGCCCACTTGGCGCTGTGAGGTGTGCGATTACGAAACCAACGTGGCACGAAATCTACGCATCCATATGACTAGCGAGAAGCACATGCACAACATGATGCTCTTGCAGCAGAACATGAAGCAAATccagcacaaccttcacctgGGCCTGGCGCCGGCCGAAGCTGAGCTCTATCAGTACTACCTGGCTCAGAACATCGGCCTGACTGGCATGAAGCTGGACAACCATTCAGATCCACAAATGATGATTAACCCCTTCCAAATGGATCCCAGTGGTGCCACAGCTCTGGCTCCTGGGCTTGTAAATAATGAGCTACCGTCAGAGCTGCGTCTTGCAAGTGGTCAGCTAATGGCCGAGGACTTGTCCATCCTCTCCGCCGGAGAGCTGTCGCCTTGCATCAACGACCCGCTGCTGAAACTTTTCCAGTGTGCTGTGTGCAACAAATTCACCACGGACAGCCTGGAGACTCTGAATGCCCACGTGGCGGCCGAGCGCCTGCTCCCGGAAGACGAGTGGAGGGCCGTGATGGGCGATGTGTACCAGTGCAAGCTGTGCAACTACAACACTCAGCTCAAGGCCAACTTCCAGCTCCACTGCAAGACTGATAAGCACATGCAGAAGTACCAGCTGGTGGCCCACATCAAAGAAGGAGGCAAGGCCAACCAGTGGCGCCTCAAGTGCATTGCCATTGGCAATCCTGTGCACCTGAAGTGCAACGCCTGCGACTACTACAGCAACAGCATAGAGAAGCTGCGGCTACACACCACCAACCAGAGGCACGAGGCAGCGCTCAAGCTCTACAAGCACTTGCAAAAACAGGAGAGCGCGTGCAGCTCGGACTCGTGCTCCTTCTACTGCGCGCTGTGTGACTACTCAAGCAAAGCCAAGCTGAACCTGGTGCAACACCAACGTTCGCTCAAGCACCAGCAGAACGAAGGACTGAGGAAGCTGCAGCTGCACCAGCAAGGTCTGCCGCTGGAGGAGGACAACCTCGCCGAGATCTTCTTCATCAAGGACTGCCCTCAAGCCGAGACCGAGGACCCGGGTGAGGACACCGAGGGACCGAGACGAGCTTCCTCAGTGGCTGCGGCCGAGGACAAAGACACAAGCGAGAGAGAAAGCCAGGAGGGCAAGAGGACAGAGAAAGACTCCAgCGGTAATACACTGGCGAAAGAAATTCTGGAGAATGCTGCAGTGGGGAAGCGATCACTTCAACAGGAGAAAGAAAACGACACTCCACCAaagaggcccaaatctgttGAGGAGAAGACGCTTACCAATGAGCAAGTGCAGCAGTGTCCATACTGTAATTACAGCAGCAAAGACGCAAACCGTCTGCAGCTGCACATCATGTCCCAGCATTCCATGCAGCCCGTCATCTCCTGTCCCCTGTGTCAGGATGTCCTCAGCAACAAGATTCACCTGCAGCTGCATCTCACACACCTCCACAGCGTGGCTCCAGACTGTGTGGAGAAGCTGCTTATGACAGTGGCAGGTCCAGATGTTACAATGCCAAATAAGTCATTGATACCTGCACCTGTACAAGACAAAGCCCCATCTGTAATGAACTCTTCAGCTGAGGCATCTGGAAAGCCCATGGGAAACAGCTCTAAGGATTTGAAAAATAGCACAGGCACAGACAAAAGTGACCTTGAGCTTGCCAGTGAGGAAGTCAAGCCACCAAAAGAGGCTGCTGAGGCTCcagattggaaaaaaaacactggccaGGACAGGAAGAGCCCAGATTCCCTGCAGGAACACCTGAGCGACCTGCAAAAACGCCAGCAGCTCTCTGTCTCCGATCGCCATGTCTATAAATATCGCTGCAACCACTGCAGCCTGGCATTTAAGACATTGCAGAAGCTTCAGATACATTCACAATACCATGCCATTCGGGCAGCCACAATGTGCAGTTTGTGCCAGCGCAGCTTCAGGACGTTCCTCGCCCTCAGAAAGCACCTGGAGACTGGTCACCCTGAGCTTAGTGAAGCTGAAGTGCAGCAGCTGTGTGGAAGTCTACCACTCAATGGTGATATCACAGAGACTGAGGCAAGAGCACTGGAAGAGGCACAAGCGTTAGAACAAGAAATGGATAAAGACGACGAGCTGGACCAAGAAGGAAAGGCCAGTCCTACTGGAAGTGACAGTAGCTCCTTGCTTGATGAGATGGGTTCCGAACCAAAGCGGACCTTGCCTTTTAGAAAAGGTCCAAATTTCACAATGGAGAAGTTTCTAGACCCATCTCGTCCATACAAATGCACTGTGTGTAAAGAGTCATTTACTCAAAAGAACATTCTGCTCGTTCATTACAACTCTGTCTCACACTTGCATAAGCTAAAGAAAGTTCTCCAAGAAGCCTCAAGTCCAGTTCCCCAGGAAACCAGCAACAATGTTGACAACAAACCAtacaaatgtaatatatgtaatgttGCTTATAGCCAAAGCTCAACCCTGGAGATTCATATGAGGTCTGTCCTTCATCAGACTAAAGCAAGAACTGCCAAACTGGAAACAAGCAGTTCCAGTAGTGGAAGTGGAAGTGGATCTGTACCATCTAACAGCCCTGTTCCAGTCAGTCAGGGAAACACAGAATCTGTGAGTTTACCAGTATCATCGAACAAAGAGAACAATGTAGATACCAAAGAAGTAAACATAAAGCCAACTACTGATCATGTCGCTGTTCAGCAATCTCATCAGTCCACCCCGTCACCAGCGCAGCTTCAGATGCAACTGCAACATGAGCTTCAGCAGCAGGCCGCCTTCTTCCAGCCACAGTTCCTGAATCCAGCATTCTTCCCCCACTTCCCAATGACACCAGAGGCTTTGTTACAATTCCAACAACCCCAGTTCCTTTTCCCGTTCTATATTCCTGGCACTGAGTTTAATATCAGCCCTGAGCTGGCATTGCATTCAGCTGCATTTGGGATGCCAGGCATGACTGGGTCATTCCTTGAGGATCTAAAGCAGCAGATGCAGCAACAGCACCAACTGGGCCAACAGCAGCTTCAGCTTTCTCAGCAACAAGCTCAACAGCAAGCCTCTCAGatgcaacagcagcaacaaaaaGCCCAGCAGCAGAGCCACAAGCCTAAGCCAGAGCCCAATCATATCTCTGTGCCTGAGATTCAGATGTCCAGAGATGTGGAAGAGCACATGGAAAAGCAAGATAACAAAGCAAAGCAAGAGACTGTCAATGATCCGgataacaataaagaaaataaggATTCCAAAAAGCCTAAATTTTCTGAACCTTTAATTCCTCCACCACGCATCATTTCTGGGGCCAGGGGTAATGCTGCAAAGGCCTTACTAGAAAACTTTGGCTTTGAACTGGTAATTCAGTACAATGAGAACAGACAAAAATGCCAGAAAAAGAACAGAGAGGAagaaataaatgacaaattagAGTGTGGTATGTGTGGAAAATTTTTCTCCAATATGTTAATCCTCAAGAGCCACCAGGAACACGTGCATGGTCAGTTCTTTCCCTATGTGGAGCTGGAGAAGTTTGCACAGCAGTACAGAGAGGCATATGATAAGCTCTATCCCATAAATCCACCTTCTCCAGAGACCCCTCCTCcgccaccaccacctccaccacctccagcaccaccagCTCCAGCAACCATTCTTCCTGCCCCCACTACAGTAGGAAAGGCACAGACACCATCTCCAGCACCGCTACAAGCTCCAccgccaccaccaccaccaccccctcctccaccacctccgCCACCCAGTGCACCTCCACAAGTGCAGCTGCCTGTCTCTCTTGACTTGCCAATTTTCCCACCATTGATGATGCAGTCCGTGCAACATCCTGGGTTACCCCCACAGCTTGCGCTACAGCTTCCAACAATGGACTCTTTATCTTCTGACCTCACACAGTTGTGTCAACAGCAACTGGGACTGGATCCAAACTTCTTGCGGCAATCCCAGTTCAAGCGTCCTCGCACCAGAATCACAGATGATCAGCTGAAAATCCTCCGTGCTTACTTTGATATCAACAACTCTCCGAATGAAGATCAGATACAAGAAATGGCAGAGAAGTCTGGCCTTCCTCAGAAAGTCATCAAGCATTGGTTCCGCAACACGCTCTtcaaagagaggcagagaagtAAAGACTCTCCTTACAATTTCAGCATTCCTCCCTTGACCACACTGGAAGATATCAGAGTAGAATCCCAGATGAATACACTAGAATACTATAAGACTGACGCAACCATGAACAAGAGATCCTCACGAACTCGATTTACAGACTACCAACTCAGAGTCCTCCAAGACTTCTTTGATACAAATGCGTACCCTAAAGACGATGAGATTGAGCAGCTTTCTACGGTTCTCTGTCTGCCGACACGTGTGATCGTGGTATGGTTTCAAAATGCCCGCCAAAAGGCAAGAAAGAGTTACGAAAACCAAGCCGATACCAAGgacagtgaaaagaaagaacTTACAAACGAGCGTTATATCCGAACCAGCAACATGCAGTACCAATGTAAGAAATGCAATGTTATTTACCCTCGAATATTTGACCTGATAACCCACCAAAAGAAGCAGTGCTacaaagatgaagatgatgatggtgcaGATGAAAACCAATCCGAGGAGATGGCAGAGAACTACGAGCAGACCACAATAAGGCAAGCAGAGTCAACTAAACAACCCACTGTCACAGCAAGCAGCTCTGGCTCCAGCTCCCCGCTAATGCCATCACCTCGACCTGAAATAGGAAAAATGTCACCCAAACCTGAGATCTCCAGTGAGAAATCAAAGCAGACCGAGAATGCCCCGTCACAAGCAGCAAAAGTAGTAGCCGATCCACGACCGTCTAAAGCTTCTACCCCTCAACCTCCTCCACAGAAAATGGCTCAGTCACAAATGACAAGACCGCATTCCCAACCTCAGTCTGCAGCTGTCCCATCCAGTCCTCTCTCCATTGCTCTCTCATCGCTTACCAACAGCATCCCTCCTCAGATGTTACAGTATCAGTGTGACCAATGCAAGATAGCTTTCCCGACTGTTGAACTGTGGCAGGAGCATCAGCATATGCATTTCCTTGCAGCTCAAAACCAGTTCTTGCATTCCCAATTCTTGGAAAGGCCGTTGGATATGCCCTACATGATATTTGACCCCAATAACCCTCTAATGACAAGTCAGCTTTTGTCCGGAGCACTTTCCCAGATACCATCACAGAGCGGCTCTGGCCTAGCCTCTGCTACTGGCTCTGGTTCTTTAAAACGTAAATTAGATGATAAAGAGGATGGCCCAAATGATAAAGAAGGTGGAAATGTTGGTGAAGACCAACACAGAGACAAACGTCTGAGAACCACTATAACACCAGAGCAACTTGAGATCCTTTATGACAAGTATCTACTTGATTCTAACCCGACAAGAAAAATGTTAGATCATATTGCCCATGAAGTGGGACTGAAGAAAAGAGTAGTTCAAGTCTGGTTTCAAAATACCCGtgccagagaaagaaaaggtcAATTTAGAGCTGTTGGGCCTTCCCAATCTCATAAAAAGTGCCCTTTCTGCAGGGCGCTCTTCAAGGCTAAGTCGGCCCTTGACAGCCACATACGCTCACGGCATTGGCACGAAGCTAAACAAGCAGGTTTTAGTTTGCCTCCAAGCCCGATGATGCTTCAGGATGAGGGAGCTGAAAGCCCACATAAATACAATTTCATGGAGTATCCACCACTGCCACCAAAGACTGAGGTAAATGAGAGTGAGCTTCCAGCTGCATCCTCCACCCCAGTCAAATCATCTGAGGCACATCTAAAAAACTTCTTGAGCCCTTCATCCTTAAAAGCAGAAAACAGTGATGAGATTGAAGGGCTTAATATGAATTCTGCAGAAGTCTCAAATGATATCAACAAAATAGATTTTGATGAGACTTCATCAATTAACACAGCTATAAGTGATGCAACAACAGGAGATGAGACTAATAATGAGGTTGAGAACCTTATAGCCAATGGTGGGGAAAAACTGGGtgagaataaaatgaatacagCACAAATCTCTGACATAACTGAAGATAGATTCCCCTTCAACATGGTGAGCCCAGCTCTAAGTTTCTCTGGCAGAGATAGCGAGCAGTACTTCAGTTCCAGAGATGATGACCTAGATGAAAATGCTGATAAAAGCGAAACCTCAAGTTTGGCTGATCCAAGCTCACCTAGTCCATTTGGAAGTGCAAATTCCTTCAAGGCTATAAAAGGTGGTGCAGAAAGACCAGGACACAAACGTTTTAGGACCCAGATGAGCAACCTACAGCTTAAAGTTCTCAAGGCTTGCTTCAGCGACTACCGCACTCCCACGATGCAGGAGTGTGAAATGCTGGGCAACGAAATAGGACTGCCAAAACGTGTTGTGCAGGTTTGGTTTCAGAATGCCCGTGCGAAAGAAAAGAAGTTCAAAATAAACATTGGAAAGCCATTTATGATAAGCCAAGGGTCTCCTGATGGACCGAGGCCTGAGTGTACTTTATGTGGTGTGAAGTATACAGCTAGACTTTCTATTCGTGATCACATCTTCTCTAAGCAGCACATTGCGAAGGTGCAAGAAACCCTGGGGAATCAGGTGGACAGAGAAAAGGACTATCTCGCACCTACCACTGTCCGCCAGCTTATGGCTCAACAAGAGCTTGACCGTCTGAAGAAGGCAACCGACATCCTTAGCTTGCCAGCCCAGCAGCAACCTGCAGTGGACAATAATGCACTTCATGGCCTTAGCCTGCCAACTGGCTACCCAGGAATACCGGGACTCCCACCAGTACTCCTTCCTGGTGTCAATGGGCCATCATCGCTTCCAGGTTTTCCACCAAATACACCTGCTTTAGCGTCTCCTGGTGCTGGCATGCTTGGGTTCCCTACTCCAGCCACCCCTTCTCCTGCCATGTCTCTCAGCAGTACCCCAACCAAGACTCTTCTGCagactcctcctcctcctcctccacctcctcctcccgCTCCTCCTGTTCCTTCTGTCCCTCCTGTTCCTTTGGCAGCCAGTCAGACTGAGCAGCACAGCAAAGTATCTGAAAAAGATAAGAAGTTGGAGAAGCTCATGAAGGTCAAGGAAAGAGAAGCCGACGCCCCACGCCCCGAGACCCCTAGCGTGAAGAAAAGGGAGAAGCCTTCGCCGGTGCTTTCGGCAATGGGAAAAGTCGGAGGTGACGCTCTGATGGACCCAGCACAACTGCAAGCACTTCAGAATGCCATCGCCGGTGACCCAGGCTCCTTCTTAGGGGGGCAGTTCTTGCCTTATTTCATCCCTGGCTTTGCGTCCTGCTTCTCACCACAGCTTCCTGGTGGAGTGCAGGGGGGCTACTTCCCTCCCTTGTGTGGAATGGAGAACCTGTTCCCGTACGGCCCGGCAATACCACAAGCCATCGCAGGCCTCTCCCCGACGGCCATCCTGCAGCAGTACCAGCAGTATCAACAGTCGCTCCAGGATTCcttgcagaagcagcagaacaaacatgagcagcagcagcagaaaccTCCCCCTGCGAAGGCATCCAGTGCACAGTGCAACTCATTTAAACCAAAAGAGGCTAACGAGACTAAGGATGATAAAGGCTCTTCGACAGAAAGCACAAAAGAAGAACCACCAAAAAATACCAAAAGTTCAGACTTTCCAGATGCTTTTATTATTCCGTCCATCAAACATGAGTTTATATGCAGAAAGTGCCAGATGATTTTCGCTGATGAAGACTCAGCAGTTCGTCATCAGAAGTCCTTCTGTTACTTTGGCCACCCTTTTACCGACCCGCAAGAGACAGTGCTTCGTAAGGCGGTGAGCATGTATAATTGCATAGCCTGCAATGTGGCTGTTAGTGGGAACGAAGCACTGGGCCAACACCTTCAGTCGAGCTTGCACAAAgagaaaacaatcaaacaagCAATGAGAAATGCCAAAGAGCATGCTAGATTATTACCTCACTCAGTCTGCTCCCCTAATCCTAACACCACATCTACCTCGCAGTCTGCAGCTTCTTCTAATAACACCTTCCCTCATCTCTCTCGCTTGTCCATGAAGTCCTGGCCAAATATTCTTTTCCAGGCCTCAGCCAGGAAAGCTGCTTCCTCCCCAtctgcttctcctcctcccCTTTCCTTGCCTTCAACGGTTACCTCAACTTCGTGCAGCACCTCAGGGGTTCCAACCTCGCTACCCACCGAAAGTTGCTCAGACGAGTCTGACAGTGAGTTAAGCCAGAAGCTGGACGACTTAGATAACTCATTGGAAGTCAAGGCTAAGGCGACCCCTGGCCTCGATGGCAATTTCAGTAGTATGAGAATGGATATGTTCAGTGTGTAGGAGTGAAAACAGGATCccttgcttaaaaaaaaagaaaaaataagactTTTAACTGCAGTTCCAAAGTTTCTCTAAcccaaaaaaattacagtacCAAATGATTGACTCAGGATTGTTTTTCCCATATTGATATGCTGGCAAgatattgattgatttttgttATGGACAGAACTGTTGCAGATGCTTGACTGAGCTTATATTGTATacaaaaaaatgagtaaaaaatctCACAAGTTCTTTTGGAGCTTGTTTCAAGCCAAAAAACTCTCACGATAGCAAATTGCACCTCAGCTGGATTGATTTCCTAATGCTAGCATGTACTGTATGGGATGATGATCCAGAACTTTCAAAGAGAATTTCTCTTAGTTTAGTTAGGTGTAATCCAGTAGCTTTAAATTCTCAGGTCAGAACATAACATTTCTCATTTGTTGAAGCAGCAAAGAAGCCTGGTGACACGTGGCTTTTTACCAAAACATGTCAAGCTTTATTGGACGCATTTTCTCGATGTGTGTAGTGTACCAAGAGACGATATAACTGTTACAGAACACATGCATATCCTTTTTAGTTTTGCCCTACAAGAcggtattttttttgtttttgttttcgtACCACTGAGGGATTTCCGAATGGTGAAATAATGTGTACGCCCCTTGTGTTTGCTACAAGCTCTATTTATATCCAGCGCCCTTTTTCTTGTATAATATACTAATAATCTGTGCCAacttttttcttgcttttacCTCTGAAcaccaccttttttttctgaagaggTAATAATTCTAGTTTTGATAGTCTCTTGATTATGTGAATAGgacattttttcatttgtgaaTTGCTATACTGTTACGGTACTTGCTTGTGTCTGGACAATAGtgcacttatttttatttcgtttacttttttttatcattttcataggccatgtgttaatttaatagttttgtttcgttcgtttgttttttaattattatttgtgtgtagtgcagcaacAGATTTGATCCACATTTGTTAGAAGTTGTGATGCCTAACAATCCAGAGACCTATTTATCAATTGGTGCATCCATGAAAGTAGTACTGTATACTTGAAACTGTTAAAGTGCAAGTtggacaaaaatatttaaaacaaaaaaataaaacaaaacaaaaaaaggtatGAACATTTTGCTTCTTGTAAGCAAGAAAgctgctttaaaaaacaaaggGGGTTGGGACGAAGCGTCTGTTTTGTATAATGAAAACTTTTCCCTGTAGGACTGAATACAGTGTTAGCCCTATACACTGCCATTTGGTGCATAGGTTACGTTACTTCCATTCTACTCTGGGCACTTCTGTTGTTCTGTCATACTGAGCATTTTTTTGATTTCCTGTCACATTTTAGTCATATATGCATTACGAAGTATTATCTTATAACACCGTTTTGCTGCTAACGTTATTTTGCTTGCCATAAATCCTCTTCTTACCACACACGGCTTCCTACCATGCAGAAATCATAAACTGCTTTACTTTGTTGGGATttccttttatcttttttccttctattCCTTTTTCGTGGAACTTAAAGAATGTGAAAgggtgttaattttttttttcttactgaatcactttttcttgtttcgttaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09380 ZFHX4; zinc finger homeobox protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396013 lncRNA upstream 6230 18688759 ~ 18726730 (+) True G334371
XR_004576991.1 lncRNA upstream 26867 18705292 ~ 18706093 (+) True LOC117595807
XR_003404150.2 lncRNA upstream 51137 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA upstream 52462 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA upstream 148205 18543390 ~ 18584755 (+) True LOC113541128
TU396219 lncRNA downstream 143917 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 144464 18933049 ~ 18933251 (+) True G334575
TU396394 lncRNA downstream 529272 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA downstream 529272 19317857 ~ 19360737 (+) False dap
TU396406 lncRNA downstream 557304 19345889 ~ 19351752 (+) True G334733
XM_026938176.2 mRNA upstream 190200 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA upstream 190200 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA upstream 190604 18534281 ~ 18542356 (+) False hnf4g
XM_034298018.1 mRNA upstream 205265 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 205265 18523279 ~ 18527695 (+) True LOC113541230
XM_034298157.1 mRNA downstream 27649 18816234 ~ 18931272 (+) False LOC113541280
XM_034298158.1 mRNA downstream 27651 18816236 ~ 18931272 (+) False LOC113541280
XM_034298155.1 mRNA downstream 27651 18816236 ~ 18931272 (+) False LOC113541280
XM_026938166.2 mRNA downstream 27654 18816239 ~ 18931272 (+) True LOC113541280
XM_026937802.2 mRNA downstream 232421 19021006 ~ 19033661 (+) False zc2hc1a
TU396015 other upstream 15007 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 352946 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 353586 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 409665 18315360 ~ 18323295 (+) False mtfr1
TU396386 other downstream 550621 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 550621 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 550621 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 550621 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 550621 19339206 ~ 19427936 (+) False dap

Expression Profile