Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403355.2 |
| length | 563 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC113532560 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 4800572 ~ 4803511 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU386745 | lncRNA | upstream | 144057 | 4649025 ~ 4656515 (+) | True | G326374 |
| TU386740 | lncRNA | upstream | 213250 | 4579550 ~ 4587322 (+) | True | G326369 |
| TU386730 | lncRNA | upstream | 257877 | 4542427 ~ 4542695 (+) | True | G326359 |
| XR_004576935.1 | lncRNA | upstream | 331722 | 4466508 ~ 4468850 (+) | True | LOC117595758 |
| TU386681 | lncRNA | upstream | 394011 | 4398678 ~ 4406561 (+) | False | LOC113532991 |
| TU386800 | lncRNA | downstream | 326 | 4803837 ~ 4804059 (+) | True | G326429 |
| TU386812 | lncRNA | downstream | 120667 | 4924178 ~ 4924636 (+) | True | G326440 |
| TU386834 | lncRNA | downstream | 179962 | 4983473 ~ 4983680 (+) | True | G326458 |
| TU386818 | lncRNA | downstream | 181979 | 4985490 ~ 4989316 (+) | False | klf10 |
| TU386838 | lncRNA | downstream | 216271 | 5019782 ~ 5029790 (+) | True | G326462 |
| XM_026924220.2 | mRNA | upstream | 29956 | 4556125 ~ 4770616 (+) | False | LOC113532696 |
| XM_026924218.2 | mRNA | upstream | 29956 | 4561256 ~ 4770616 (+) | True | LOC113532696 |
| XM_026924511.2 | mRNA | upstream | 255225 | 4501487 ~ 4545347 (+) | True | slc9a1a |
| XM_034298293.1 | mRNA | upstream | 366321 | 4398659 ~ 4434251 (+) | False | LOC113532991 |
| XM_026923880.2 | mRNA | downstream | 38948 | 4842459 ~ 4856152 (+) | True | ifnlr1 |
| XM_026924871.2 | mRNA | downstream | 61058 | 4864569 ~ 4918469 (+) | True | myom3 |
| XM_026924089.2 | mRNA | downstream | 117662 | 4921173 ~ 4923671 (+) | False | fabp10a |
| XM_026924600.2 | mRNA | downstream | 121270 | 4924781 ~ 4930155 (+) | False | srsf10a |
| XM_026924263.2 | mRNA | downstream | 180904 | 4984415 ~ 4988847 (+) | True | klf10 |
| TU386582 | other | upstream | 787034 | 4011410 ~ 4013538 (+) | False | hamp |
| TU385671 | other | upstream | 2230833 | 2565700 ~ 2569739 (+) | False | G325435 |
| XR_003403389.2 | other | upstream | 2586273 | 2210222 ~ 2214299 (+) | False | LOC113533074 |
| XR_003403390.2 | other | upstream | 2586311 | 2210222 ~ 2214261 (+) | False | LOC113533074 |
| TU385279 | other | upstream | 2656061 | 2142506 ~ 2144511 (+) | False | bola1 |
| TU386810 | other | downstream | 117469 | 4920980 ~ 4923681 (+) | True | fabp10a |
| TU386814 | other | downstream | 121275 | 4924786 ~ 4930154 (+) | True | srsf10a |
| TU387482 | other | downstream | 528757 | 5332268 ~ 5338251 (+) | True | G326997 |
| TU389428 | other | downstream | 3098281 | 7901792 ~ 7902608 (+) | False | LOC113532663 |
| XR_004576973.1 | other | downstream | 3584676 | 8388187 ~ 8484833 (+) | False | LOC113532774 |
