Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404154.2 |
| length | 1259 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113541188 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 20167317 ~ 20172924 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04660 | T cell receptor signaling pathway |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU397218 | lncRNA | downstream | 106158 | 20060024 ~ 20061159 (-) | True | G335460 |
| TU397159 | lncRNA | downstream | 264981 | 19879892 ~ 19902336 (-) | True | G335404 |
| TU397160 | lncRNA | downstream | 274854 | 19889080 ~ 19892463 (-) | False | cnksr2a |
| TU396961 | lncRNA | downstream | 378259 | 19788583 ~ 19789058 (-) | True | G335232 |
| TU396959 | lncRNA | downstream | 394260 | 19772853 ~ 19773057 (-) | True | G335230 |
| TU397629 | lncRNA | upstream | 387249 | 20560173 ~ 20564445 (-) | False | stag1b |
| TU397652 | lncRNA | upstream | 487704 | 20660628 ~ 20661829 (-) | True | G335800 |
| TU397687 | lncRNA | upstream | 571635 | 20744559 ~ 20745016 (-) | True | G335831 |
| TU397718 | lncRNA | upstream | 749983 | 20922907 ~ 21002111 (-) | True | G335859 |
| TU397730 | lncRNA | upstream | 844022 | 21016946 ~ 21018572 (-) | True | G335868 |
| XM_026937998.2 | mRNA | downstream | 120148 | 20026736 ~ 20047169 (-) | False | klhl24b |
| XM_026937997.2 | mRNA | downstream | 120148 | 20026736 ~ 20047169 (-) | True | klhl24b |
| XM_034298101.1 | mRNA | downstream | 121531 | 20026736 ~ 20045786 (-) | False | klhl24b |
| XM_034298100.1 | mRNA | downstream | 121531 | 20026736 ~ 20045786 (-) | False | klhl24b |
| XM_034298102.1 | mRNA | downstream | 121762 | 20026736 ~ 20045555 (-) | False | klhl24b |
| XM_026938000.2 | mRNA | upstream | 61862 | 20234786 ~ 20240380 (-) | True | and1 |
| XM_026938022.2 | mRNA | upstream | 69564 | 20242488 ~ 20246311 (-) | True | cops9 |
| XM_026938017.2 | mRNA | upstream | 73527 | 20246451 ~ 20248460 (-) | True | otos |
| XM_034298193.1 | mRNA | upstream | 76533 | 20249457 ~ 20252001 (-) | True | apodb |
| XM_034297872.1 | mRNA | upstream | 108687 | 20281611 ~ 20293054 (-) | True | lrrc31 |
| TU396884 | other | downstream | 563624 | 19600727 ~ 19603693 (-) | True | G335165 |
| TU396861 | other | downstream | 588397 | 19576108 ~ 19578920 (-) | False | nup58 |
| TU395862 | other | downstream | 1647112 | 18444658 ~ 18520205 (-) | False | mybl1 |
| TU395863 | other | downstream | 1724322 | 18442355 ~ 18442995 (-) | False | mybl1 |
| trnay-gua_4 | other | downstream | 1787583 | 18379649 ~ 18379734 (-) | True | trnay-gua_4 |
| TU397303 | other | upstream | 6488 | 20179412 ~ 20182412 (-) | True | G335523 |
| TU397559 | other | upstream | 69596 | 20242520 ~ 20246278 (-) | False | cops9 |
| TU397560 | other | upstream | 73642 | 20246566 ~ 20248461 (-) | False | otos |
| TU397621 | other | upstream | 357698 | 20530622 ~ 20557948 (-) | False | fndc3bb |
| TU397639 | other | upstream | 437308 | 20610232 ~ 20612309 (-) | True | G335788 |
