RNA id: XR_003404160.2



Basic Information


Item Value
RNA id XR_003404160.2
length 541
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC113541248
representative False

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15570863 ~ 15579798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ctccttttttttttcttctgccaGTCAGTAGCCTGGCTGCAGCATTCTGCCCAAGCCTTAGGCGGGACAGTTGCCGCTGACAGAGTCCTGGATAGAGAGAGTTGCAATTGTCCAATCTAGatgtaataaaagcatgaataaTTAACTctaaatttttaaaactaaGCAAAGCTTTTAGCTTAGAAATCATCCCAAGCTGGTAGAAGCTGCCTTTAACAACAGAATTTATCTGTCTATCAAAGCTAAGAGTTGAGTCAATTATAAAACCAAGATTTCTCACACTGTCTTTCACAGTTATTTCTAAAGGAGCGAGAATACTGGTTatcttctctgtgtgttttgggggaacaaatataataatctCTGACTTTCTTTCGAAAGTAAAGTAAACGTAGATTGTGTAAGCAGATTGTATCAGTGCATCTTCTAGTTACATTCAGCACTTGAAGCCATCTGCCCTCTATCTCCAGATCTTTCTTTCACTATGTTTATGCTGCCAGTATTTCAGGGAAAAAATGTTATATTCTTAAGTGAAAACtcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_003404151.2 lncRNA upstream 151940 15413872 ~ 15418923 (+) True LOC113541145
TU393773 lncRNA upstream 238431 15328614 ~ 15332432 (+) True G332527
TU393552 lncRNA upstream 255895 15223520 ~ 15314968 (+) False stau2
TU393555 lncRNA upstream 368558 15201817 ~ 15202305 (+) True G332348
TU393529 lncRNA upstream 458340 15111663 ~ 15112523 (+) False G332334
TU393930 lncRNA downstream 20271 15592088 ~ 15617234 (+) True G332650
TU394071 lncRNA downstream 469567 16041384 ~ 16041587 (+) True G332788
TU394073 lncRNA downstream 529933 16101750 ~ 16102212 (+) True G332790
TU394074 lncRNA downstream 530454 16102271 ~ 16102597 (+) True G332791
TU394160 lncRNA downstream 647736 16219553 ~ 16220945 (+) True G332859
XM_026937952.2 mRNA upstream 173336 15382986 ~ 15397527 (+) True si:ch73-173p19.1
XM_034298261.1 mRNA upstream 304968 15251636 ~ 15265895 (+) True si:ch73-173p19.2
XM_034298109.1 mRNA upstream 346272 15134353 ~ 15224591 (+) False stau2
XM_034297849.1 mRNA downstream 15485 15587302 ~ 15614891 (+) False tpk1
XM_026937807.2 mRNA downstream 15854 15587671 ~ 15614891 (+) False tpk1
XM_026937805.2 mRNA downstream 15988 15587805 ~ 15614891 (+) True tpk1
XM_026937806.2 mRNA downstream 16005 15587822 ~ 15614891 (+) False tpk1
XM_026937826.2 mRNA downstream 48331 15620148 ~ 15629965 (+) True panx1a
TU393912 other upstream 4200 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 306276 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 2185589 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 2312447 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2858185 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 1535655 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1535655 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 1713265 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 1715343 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 1715343 17287160 ~ 17295054 (+) False G333388

Expression Profile