Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576951.1 |
| length | 577 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC113541248 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 15570863 ~ 15579798 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404151.2 | lncRNA | upstream | 151940 | 15413872 ~ 15418923 (+) | True | LOC113541145 |
| TU393773 | lncRNA | upstream | 238431 | 15328614 ~ 15332432 (+) | True | G332527 |
| TU393552 | lncRNA | upstream | 255895 | 15223520 ~ 15314968 (+) | False | stau2 |
| TU393555 | lncRNA | upstream | 368558 | 15201817 ~ 15202305 (+) | True | G332348 |
| TU393531 | lncRNA | upstream | 457349 | 15065975 ~ 15113514 (+) | True | G332334 |
| TU393930 | lncRNA | downstream | 12290 | 15592088 ~ 15617234 (+) | True | G332650 |
| TU394071 | lncRNA | downstream | 461586 | 16041384 ~ 16041587 (+) | True | G332788 |
| TU394073 | lncRNA | downstream | 521952 | 16101750 ~ 16102212 (+) | True | G332790 |
| TU394074 | lncRNA | downstream | 522473 | 16102271 ~ 16102597 (+) | True | G332791 |
| TU394160 | lncRNA | downstream | 639755 | 16219553 ~ 16220945 (+) | True | G332859 |
| XM_026937952.2 | mRNA | upstream | 173336 | 15382986 ~ 15397527 (+) | True | si:ch73-173p19.1 |
| XM_034298261.1 | mRNA | upstream | 304968 | 15251636 ~ 15265895 (+) | True | si:ch73-173p19.2 |
| XM_034298109.1 | mRNA | upstream | 346272 | 15134353 ~ 15224591 (+) | False | stau2 |
| XM_034297849.1 | mRNA | downstream | 7504 | 15587302 ~ 15614891 (+) | False | tpk1 |
| XM_026937807.2 | mRNA | downstream | 7873 | 15587671 ~ 15614891 (+) | False | tpk1 |
| XM_026937805.2 | mRNA | downstream | 8007 | 15587805 ~ 15614891 (+) | True | tpk1 |
| XM_026937806.2 | mRNA | downstream | 8024 | 15587822 ~ 15614891 (+) | False | tpk1 |
| XM_026937826.2 | mRNA | downstream | 40350 | 15620148 ~ 15629965 (+) | True | panx1a |
| TU393912 | other | upstream | 4200 | 15566175 ~ 15566663 (+) | True | G332636 |
| XR_004576981.1 | other | upstream | 306276 | 15251635 ~ 15264587 (+) | False | si:ch73-173p19.2 |
| trnat-agu_17 | other | upstream | 2185589 | 13385201 ~ 13385274 (+) | True | trnat-agu_17 |
| TU392569 | other | upstream | 2312447 | 13257894 ~ 13258416 (+) | True | G331476 |
| TU392341 | other | upstream | 2858185 | 12706939 ~ 12712678 (+) | True | G331263 |
| TU394735 | other | downstream | 1527674 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394736 | other | downstream | 1527674 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394798 | other | downstream | 1705284 | 17285082 ~ 17300011 (+) | True | G333388 |
| TU394792 | other | downstream | 1707362 | 17287160 ~ 17302004 (+) | False | G333388 |
| TU394797 | other | downstream | 1707362 | 17287160 ~ 17295054 (+) | False | G333388 |
