RNA id: XR_003404161.2


Basic Information

Item Value
RNA id XR_003404161.2
length 562
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC113541266
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15935828 ~ 15943189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGATAGAACTAGAGATGaaatgatgtatgtgtgtgaattatGTATTGATGCCTTTAGGTATTTGTCCTGAGCAGTGGGAAGTCAACCTccagcacaaacacactctaTATTCACTTTAAAGCTGGATATTTACAGCCAGTGTGAATCCTTCATGAATGGTCACAGTAGGACTCGCAGTAAATGGATTAGAAATGATGCTCGTGAAAGCTCTAGTGGATTTGCTGCTTCCTCTCTGGACTGAGgttctcTACAGCTGTGTTATAACCTCGGGGGTCTTCTCAAACCCTTCACCATCAATCTGTCTCAGCGCAATTTGGCCAACAGACATCCACACAGCGTGAACATTACcagaatagagagagaaatctgACAGCATTTTACATTTCTACAGCTTCCTACATAATCAGGGCTGCGCAACAGGAACTGATGAGGTGATGAGGTCGAGATGTGAAGCAACATCAAAAGTGTAGTctggattagtgtgtgtgtgtgtgtgttctctagTCATTTTTATCTTCTGTCACTCTGAGTGAATAGTAGTAGTCCATACTaatgttatg

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393962 lncRNA downstream 305384 15630223 ~ 15630444 (-) True G332682
TU393956 lncRNA downstream 315111 15620506 ~ 15620717 (-) True G332676
TU393941 lncRNA downstream 316987 15615500 ~ 15618841 (-) False sec61g
TU393913 lncRNA downstream 369182 15566187 ~ 15566646 (-) True G332637
TU393844 lncRNA downstream 538696 15345272 ~ 15397132 (-) True G332580
XR_003404166.2 lncRNA upstream 35927 15979116 ~ 15985108 (-) True LOC113541293
TU394080 lncRNA upstream 98123 16041312 ~ 16041512 (-) True G332797
XR_004576975.1 lncRNA upstream 117091 16060280 ~ 16071498 (-) True LOC117595797
TU394284 lncRNA upstream 368854 16312043 ~ 16312879 (-) False cpa6
TU394528 lncRNA upstream 677569 16620758 ~ 16622013 (-) True G333175
XM_026938187.2 mRNA downstream 36230 15777021 ~ 15899598 (-) True LOC113541299
XM_026937817.2 mRNA downstream 316986 15615498 ~ 15618842 (-) True sec61g
XM_026937893.2 mRNA downstream 353794 15579275 ~ 15582034 (-) True LOC113541101
XM_034298225.1 mRNA downstream 376373 15417104 ~ 15559455 (-) True LOC113541144
XM_034298226.1 mRNA downstream 421822 15417104 ~ 15514006 (-) False LOC113541144
XM_026938237.2 mRNA upstream 153792 16096981 ~ 16115913 (-) True LOC113541324
XM_026938238.2 mRNA upstream 181928 16125117 ~ 16140956 (-) True tnfrsf11a
XM_026938239.2 mRNA upstream 182622 16125811 ~ 16140956 (-) False tnfrsf11a
XM_034297862.1 mRNA upstream 201867 16145056 ~ 16200311 (-) True relch
XM_034297866.1 mRNA upstream 202348 16145537 ~ 16200451 (-) False relch
TU393587 other downstream 870018 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 998424 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 3257895 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 3257895 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 4852677 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 887507 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 887507 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 1172909 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 1242335 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 1964705 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile