Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576935.1 |
| length | 423 |
| lncRNA type | inter_gene |
| GC content | 0.52 |
| exon number | 3 |
| gene id | LOC117595758 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 4466508 ~ 4468850 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU386681 | lncRNA | upstream | 59947 | 4398678 ~ 4406561 (+) | False | LOC113532991 |
| TU386679 | lncRNA | upstream | 71724 | 4391584 ~ 4394784 (+) | False | hmgn2 |
| TU386648 | lncRNA | upstream | 107390 | 4319215 ~ 4359118 (+) | True | G326288 |
| TU386632 | lncRNA | upstream | 114661 | 4348781 ~ 4351847 (+) | True | G326281 |
| TU386524 | lncRNA | upstream | 493506 | 3967532 ~ 3973002 (+) | True | G326193 |
| TU386730 | lncRNA | downstream | 73577 | 4542427 ~ 4542695 (+) | True | G326359 |
| TU386740 | lncRNA | downstream | 110700 | 4579550 ~ 4587322 (+) | True | G326369 |
| TU386745 | lncRNA | downstream | 180175 | 4649025 ~ 4656515 (+) | True | G326374 |
| XR_003403355.2 | lncRNA | downstream | 331722 | 4800572 ~ 4803511 (+) | True | LOC113532560 |
| TU386800 | lncRNA | downstream | 334987 | 4803837 ~ 4804059 (+) | True | G326429 |
| XM_034298293.1 | mRNA | upstream | 32257 | 4398659 ~ 4434251 (+) | False | LOC113532991 |
| XM_034298292.1 | mRNA | upstream | 32257 | 4398666 ~ 4434251 (+) | True | LOC113532991 |
| XM_026924760.2 | mRNA | upstream | 32257 | 4426586 ~ 4434251 (+) | False | LOC113532991 |
| XM_034298294.1 | mRNA | upstream | 32257 | 4430161 ~ 4434251 (+) | False | LOC113532991 |
| XM_026923895.2 | mRNA | upstream | 71724 | 4391520 ~ 4394784 (+) | True | hmgn2 |
| XM_026924511.2 | mRNA | downstream | 32637 | 4501487 ~ 4545347 (+) | True | slc9a1a |
| XM_026924220.2 | mRNA | downstream | 87275 | 4556125 ~ 4770616 (+) | False | LOC113532696 |
| XM_026924218.2 | mRNA | downstream | 92406 | 4561256 ~ 4770616 (+) | True | LOC113532696 |
| XM_026923880.2 | mRNA | downstream | 373609 | 4842459 ~ 4856152 (+) | True | ifnlr1 |
| XM_026924871.2 | mRNA | downstream | 395719 | 4864569 ~ 4918469 (+) | True | myom3 |
| TU386582 | other | upstream | 452970 | 4011410 ~ 4013538 (+) | False | hamp |
| TU385671 | other | upstream | 1896769 | 2565700 ~ 2569739 (+) | False | G325435 |
| XR_003403389.2 | other | upstream | 2252209 | 2210222 ~ 2214299 (+) | False | LOC113533074 |
| XR_003403390.2 | other | upstream | 2252247 | 2210222 ~ 2214261 (+) | False | LOC113533074 |
| TU385279 | other | upstream | 2321997 | 2142506 ~ 2144511 (+) | False | bola1 |
| TU386810 | other | downstream | 452130 | 4920980 ~ 4923681 (+) | True | fabp10a |
| TU386814 | other | downstream | 455936 | 4924786 ~ 4930154 (+) | True | srsf10a |
| TU387482 | other | downstream | 863418 | 5332268 ~ 5338251 (+) | True | G326997 |
| TU389428 | other | downstream | 3432942 | 7901792 ~ 7902608 (+) | False | LOC113532663 |
| XR_004576973.1 | other | downstream | 3919337 | 8388187 ~ 8484833 (+) | False | LOC113532774 |
