RNA id: XR_004576956.1


Basic Information

Item Value
RNA id XR_004576956.1
length 679
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC117595778
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13258456 ~ 13260558 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGCAGGAGCACAGAAGCAGGCCTCGGAGTGtttaaggacacacacactgaatcctCATACACCCTCTGCTtctttatttactgcattatagtaagcttttattcatttttattagtgtataagagaacaaacacacactgaatccTCATACACCCTCTGCTtctttatttactgcattatggtgggaggaaaccggagaacccggaggaaacccatgtggacataAGAAGAACAAGTGAAGAATAAAGAACCTGAGAAGATAGCTGTCCATATGATGGAACAAACCAGAAGCAGACATACTGCAGATACTGGTGAAATTTTGTACTGACGATGACAATAGTGAACAAATTAGTGATCACTGATCTTGCTCCTGGAAATCCATCTTCCTACAGAATTCAGGGCTGAATTGCATAATCAAGTAGACTGATAATCTGGAGCAGGTGTGTTTACTTATCAGGATTTTTGGGGAGAAAATTCCAGACAGCATAGAATGTCAGACGAAATAGCTGAGTTTAGGCACATAGGGGTCATTTATGGCAATGGCAAATGTATTGTAACTCAGCAGTCACATTTATGTTCATGACCTTTGGGAGCTGAGCCAAAATGACCCAAATTCAACTAAACATATCTACTACTTGTCTGGCATTCCAATTAGTGTAGAGTGGTCCATACCATg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392525 lncRNA upstream 68501 13187836 ~ 13189955 (+) True G331441
TU392433 lncRNA upstream 193009 13064703 ~ 13065447 (+) True G331349
TU392432 lncRNA upstream 196797 13061335 ~ 13061659 (+) True G331348
TU392428 lncRNA upstream 201215 13056518 ~ 13057241 (+) True G331345
TU392427 lncRNA upstream 203937 13054285 ~ 13054519 (+) True G331344
TU392573 lncRNA downstream 3791 13264349 ~ 13264586 (+) True G331480
TU392575 lncRNA downstream 8869 13269427 ~ 13269642 (+) True G331482
TU392579 lncRNA downstream 13185 13273743 ~ 13274041 (+) True G331486
TU392580 lncRNA downstream 13569 13274127 ~ 13274411 (+) True G331487
TU392561 lncRNA downstream 26889 13287447 ~ 13290399 (+) True G331468
XM_026938128.2 mRNA upstream 215940 13021167 ~ 13042516 (+) True cul1b
XM_026938097.2 mRNA upstream 243347 12766560 ~ 13015109 (+) True LOC113541231
XM_034298168.1 mRNA upstream 545805 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 550453 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 759410 12428457 ~ 12499046 (+) True hs6st1b
XM_026937922.2 mRNA downstream 14102 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 61779 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 75780 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 83188 13343746 ~ 13350216 (+) True c8g
XM_026938162.2 mRNA downstream 113006 13373564 ~ 13379652 (+) True klhl15
TU392569 other upstream 40 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 545778 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1101669 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1509897 11738158 ~ 11748559 (+) True ankha
XR_004576969.1 other upstream 2275241 10874209 ~ 10983215 (+) False acad11
trnat-agu_17 other downstream 124643 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1991077 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2305617 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3846914 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3846914 17107472 ~ 17110027 (+) False hhatlb

Expression Profile