Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576957.1 |
| length | 1052 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC117595781 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 9472616 ~ 9482817 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU390393 | lncRNA | upstream | 119883 | 9352150 ~ 9352733 (+) | True | G329522 |
| TU390394 | lncRNA | upstream | 136808 | 9335186 ~ 9335808 (+) | True | G329523 |
| TU390202 | lncRNA | upstream | 499029 | 8973237 ~ 8973587 (+) | True | G329361 |
| TU390192 | lncRNA | upstream | 527060 | 8942878 ~ 8945556 (+) | True | G329354 |
| TU390105 | lncRNA | upstream | 723583 | 8748820 ~ 8749033 (+) | True | G329288 |
| TU390455 | lncRNA | downstream | 8457 | 9491274 ~ 9491545 (+) | True | G329581 |
| TU390437 | lncRNA | downstream | 82876 | 9565693 ~ 9568672 (+) | True | G329564 |
| TU390569 | lncRNA | downstream | 92572 | 9575389 ~ 9575704 (+) | True | G329685 |
| TU390573 | lncRNA | downstream | 117791 | 9600608 ~ 9600840 (+) | True | G329689 |
| TU390580 | lncRNA | downstream | 194166 | 9676983 ~ 9679949 (+) | False | gnal |
| XM_026923980.2 | mRNA | upstream | 21273 | 9438298 ~ 9451343 (+) | False | tmem14ca |
| XM_026923979.2 | mRNA | upstream | 21273 | 9438300 ~ 9451343 (+) | True | tmem14ca |
| XM_026923983.2 | mRNA | upstream | 21273 | 9447968 ~ 9451343 (+) | False | tmem14ca |
| XM_034298005.1 | mRNA | upstream | 21273 | 9448135 ~ 9451343 (+) | False | tmem14ca |
| XM_026924966.2 | mRNA | upstream | 57234 | 9400242 ~ 9415382 (+) | True | eef1e1 |
| XM_034298194.1 | mRNA | downstream | 27791 | 9510608 ~ 9562189 (+) | False | sycp2l |
| XM_026923975.2 | mRNA | downstream | 27792 | 9510609 ~ 9552504 (+) | True | sycp2l |
| XM_034298195.1 | mRNA | downstream | 27792 | 9510609 ~ 9551720 (+) | False | sycp2l |
| XM_026924861.2 | mRNA | downstream | 138862 | 9621679 ~ 9678201 (+) | False | gnal |
| XM_026924859.2 | mRNA | downstream | 138863 | 9621680 ~ 9687491 (+) | True | gnal |
| TU390118 | other | upstream | 616340 | 8853328 ~ 8856276 (+) | False | bmp6 |
| XR_004576948.1 | other | upstream | 653349 | 8768746 ~ 8819267 (+) | False | LOC113532648 |
| XR_004576949.1 | other | upstream | 657056 | 8768745 ~ 8815560 (+) | False | LOC113532648 |
| TU389909 | other | upstream | 806780 | 8615073 ~ 8665836 (+) | False | G329111 |
| XR_004576973.1 | other | upstream | 987783 | 8388187 ~ 8484833 (+) | False | LOC113532774 |
| TU390686 | other | downstream | 308867 | 9791684 ~ 9792733 (+) | True | G329779 |
| TU390970 | other | downstream | 948516 | 10431333 ~ 10432864 (+) | True | G330038 |
| TU390999 | other | downstream | 1112385 | 10595202 ~ 10678375 (+) | False | gli3 |
| XR_004576967.1 | other | downstream | 1391392 | 10874209 ~ 10984209 (+) | True | acad11 |
| XR_003404155.2 | other | downstream | 1391392 | 10874209 ~ 10984209 (+) | False | acad11 |
