Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576958.1 |
| length | 507 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 2 |
| gene id | LOC117595782 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 19521365 ~ 19522260 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016769 | transferase activity, transferring nitrogenous groups | molecular_function |
| GO:0008483 | transaminase activity | molecular_function |
| id | description |
|---|---|
| ko04113 | Meiosis - yeast |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU396394 | lncRNA | upstream | 160628 | 19317857 ~ 19360737 (+) | False | dap |
| TU396400 | lncRNA | upstream | 160628 | 19317857 ~ 19360737 (+) | False | dap |
| TU396406 | lncRNA | upstream | 169613 | 19345889 ~ 19351752 (+) | True | G334733 |
| TU396221 | lncRNA | upstream | 588114 | 18933049 ~ 18933251 (+) | True | G334575 |
| TU396219 | lncRNA | upstream | 588655 | 18932502 ~ 18932710 (+) | True | G334573 |
| TU396487 | lncRNA | downstream | 38842 | 19561102 ~ 19589060 (+) | True | G334806 |
| TU396561 | lncRNA | downstream | 114608 | 19636868 ~ 19703804 (+) | False | cip2a |
| TU396588 | lncRNA | downstream | 182425 | 19704685 ~ 19707006 (+) | True | G334888 |
| TU396939 | lncRNA | downstream | 244210 | 19766470 ~ 19766826 (+) | True | G335214 |
| TU396940 | lncRNA | downstream | 245203 | 19767463 ~ 19768343 (+) | True | G335215 |
| XM_026938288.2 | mRNA | upstream | 14829 | 19498302 ~ 19506536 (+) | False | pcyt1ba |
| XM_026938285.2 | mRNA | upstream | 14829 | 19498303 ~ 19506536 (+) | True | pcyt1ba |
| XM_026938115.2 | mRNA | upstream | 84605 | 19429768 ~ 19436760 (+) | True | arxa |
| XM_026938116.2 | mRNA | upstream | 85818 | 19429768 ~ 19435547 (+) | False | arxa |
| XM_026938081.2 | mRNA | upstream | 125475 | 19391973 ~ 19395890 (+) | True | ndufb4 |
| XM_034298283.1 | mRNA | downstream | 57050 | 19579310 ~ 19593452 (+) | True | mtmr6 |
| XM_026937824.2 | mRNA | downstream | 78305 | 19600565 ~ 19603770 (+) | True | amer2 |
| XM_026938183.2 | mRNA | downstream | 156244 | 19678504 ~ 19683656 (+) | False | si:ch73-264p11.1 |
| XM_034298169.1 | mRNA | downstream | 157790 | 19680050 ~ 19683656 (+) | False | si:ch73-264p11.1 |
| XM_034297890.1 | mRNA | downstream | 166770 | 19689030 ~ 19703771 (+) | False | cip2a |
| TU396388 | other | upstream | 93429 | 19339206 ~ 19427936 (+) | False | dap |
| TU396391 | other | upstream | 93429 | 19339206 ~ 19427936 (+) | False | dap |
| TU396392 | other | upstream | 93429 | 19339206 ~ 19427936 (+) | False | dap |
| TU396397 | other | upstream | 93429 | 19339206 ~ 19427936 (+) | False | dap |
| TU396398 | other | upstream | 93429 | 19339206 ~ 19427936 (+) | False | dap |
| TU396524 | other | downstream | 53851 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU396585 | other | downstream | 156221 | 19678481 ~ 19683870 (+) | True | si:ch73-264p11.1 |
| TU396584 | other | downstream | 157737 | 19679997 ~ 19683870 (+) | False | si:ch73-264p11.1 |
| TU396960 | other | downstream | 266323 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU397154 | other | downstream | 638140 | 20160400 ~ 20163106 (+) | False | ccl20b |
