Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576977.1 |
| length | 594 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC117595799 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 9057215 ~ 9081783 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004576976.1 | lncRNA | downstream | 6313 | 9049240 ~ 9050902 (-) | True | LOC117595798 |
| TU390329 | lncRNA | downstream | 46550 | 9010461 ~ 9010665 (-) | True | G329461 |
| TU390299 | lncRNA | downstream | 114857 | 8942137 ~ 8942358 (-) | True | G329447 |
| TU390289 | lncRNA | downstream | 136202 | 8920280 ~ 8921013 (-) | True | G329438 |
| TU390255 | lncRNA | downstream | 205903 | 8847485 ~ 8851312 (-) | True | G329404 |
| TU390402 | lncRNA | upstream | 267683 | 9349466 ~ 9349837 (-) | True | G329531 |
| TU390570 | lncRNA | upstream | 493601 | 9575384 ~ 9575695 (-) | True | G329686 |
| TU390617 | lncRNA | upstream | 539928 | 9621711 ~ 9622672 (-) | True | G329722 |
| TU390658 | lncRNA | upstream | 636379 | 9718162 ~ 9719292 (-) | True | G329756 |
| TU390656 | lncRNA | upstream | 637882 | 9719665 ~ 9723670 (-) | True | G329755 |
| XM_026923926.2 | mRNA | downstream | 90040 | 8962772 ~ 8967175 (-) | True | bloc1s5 |
| XM_026923927.2 | mRNA | downstream | 90040 | 8964417 ~ 8967175 (-) | False | bloc1s5 |
| XM_034298134.1 | mRNA | downstream | 102021 | 8944385 ~ 8955194 (-) | True | txndc5 |
| XM_026924128.2 | mRNA | downstream | 220384 | 8830847 ~ 8836831 (-) | True | si:dkey-197c15.6 |
| XM_026924162.2 | mRNA | downstream | 391360 | 8652432 ~ 8665855 (-) | True | cavin1b |
| XM_034298003.1 | mRNA | upstream | 369591 | 9451374 ~ 9472412 (-) | True | mak |
| XM_034298004.1 | mRNA | upstream | 369591 | 9451374 ~ 9472391 (-) | False | mak |
| XM_026923977.2 | mRNA | upstream | 369592 | 9451375 ~ 9472412 (-) | False | mak |
| XM_026923978.2 | mRNA | upstream | 369594 | 9451377 ~ 9472412 (-) | False | mak |
| XM_034298196.1 | mRNA | upstream | 422354 | 9504137 ~ 9510189 (-) | True | gcm2 |
| TU389089 | other | downstream | 1670909 | 7378780 ~ 7386306 (-) | False | sec61b |
| TU388974 | other | downstream | 1994787 | 7056794 ~ 7062428 (-) | True | G328342 |
| trnam-cau_47 | other | downstream | 2627283 | 6429860 ~ 6429932 (-) | True | trnam-cau_47 |
| XR_003403372.2 | other | downstream | 3078836 | 5829474 ~ 5978379 (-) | False | zfpm2a |
| XR_003404173.1 | other | upstream | 1203051 | 10284834 ~ 10284937 (-) | True | LOC113541360 |
| TU391129 | other | upstream | 1440949 | 10522732 ~ 10523263 (-) | True | G330185 |
| XR_003404157.2 | other | upstream | 1841343 | 10923126 ~ 10930775 (-) | False | ackr4b |
| TU391338 | other | upstream | 2000485 | 11082268 ~ 11083151 (-) | True | G330379 |
| TU392350 | other | upstream | 3594798 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
