RNA id: XR_004576983.1


Basic Information

Item Value
RNA id XR_004576983.1
length 1973
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id LOC117595805
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9695659 ~ 9714739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaactccttccaaacaacaacgcaacgagggaatccctggcaacacaaacgcaaTGCCGGCATCCCCTTCATCTCCATTCAACTGGCCACCATCGACTGTGTCTCCATCAGCAGGCCCAGCACCCGCTACATCTGAACCAACAGCTGACAAGGACAAAGGAGCCATGGGAGTAGATTACAAGAAACTTGCTAAAGAAGTATTGGCATTATCAACTGGTGGCACTGACGACATGTACCGAGACATCTGGTGAGGGTCCGACTCAGCCAGGTATCACCAGGTCAAACCGCCAGCATCAACCTTTTCAGTGGGCCCCGCTCCAAATGCCCTGATCCAATTCCCACAACCACGGACTGGACAGACTATCGAGGGTGGAAGAGTTCATCCCAAAGTCATGTATGTTTACAGGCCTCTTGAACAGTCTGAATTGGACTCAGTGGTCAAAGACATCACAAGTTGCACAATGCGTAAAGGACTTGGTCCTTCAATGATATGTTCAAAATGACCAACCAGGAGTGGACTAAAGTCATGGCTAGTGTTTTTGGGAACAAAGACACAGTGAGCACACCCATGGGATCCAGCAGCAAATAGAGATCCAAATAGCCGTCCCATCAACTTGACACTCCTGATGCAACAAATCCGTGACACTTTCCCCATAACCAGATACTGGGATAAAGTCAAAAACTGCATACAAATAACTGGAGACACAGTGGAGGAATTCACTGAATGTGTAGCTGAAGCTCTGAACAATGGCCTGATGAACAATTATGACAGAAGAACAATACATAAGGCAAGTCCTGGCTCAGGGATTGGATAAGAAGATCTTTTTTTGCAAGAGTTCCTGCACTGGCTTGCAAAACTGATCTGATGACTATACTGATCTGATGGCTCATGCTATCCATGCTGAGAGACCCCTGAGAGATAAACAGAGCAAGGCTCAAAACTCCCTTCAGATGGCACAACTCCAGTTTTATTATTAAGTATTTTTCAGTCACTGACATGGCCAgtacatttttctccattcctGTGCATCCAGAAAGCAGTCAGTGTTGGTCATGTGGGGGAACCTCTGAGAAACGTTCTTCAAGACAAAGTGCCTTAGGATTAGGGGCAATGCAGATTTCCCCCTCGAACCATCCCAGCTGGTGGTCGATGCCCACTCTTTATACAGCTGCTCTGGTAAAATGGTACGGAACAGCAAACAGCCATATCGGTCCAGCCGTCCCCGATCATTAGGATCTCTAGGTGCTCTGGTGAGGGACAAGAAAACTGGAGTTCAGGATGGCAACTTCCAGCTGGTGTTGTTGGCGTTGGACCCGTGGTGATGACAGAAGATGGTGTTTGCCTATTGTCTGCATCTCCATTCAGGCTAGCAGCGACCTCAGTCGAACAGTCTGATGTTGGGGGACGGGTAGAGTCGAGTTGAGTCCTCAATGCCTCTTTTGCTGTCTGCTCCTCTCTTAGCCTAGGGCCTACACGAGcctggtgtgtgttgttttaaaatCTGCAGTAGCTGCTTTTGCGTCTGCATATGCCTCCCTGCAGACACGAAGCTCTCTCCTCAGGGCCTCAATCTCAGCGTTCTGCCTCACTAGCTCACGCCTCAAAGTCCTCCAccacatttttctctctcttgGCaatgacacaaaacatacaGCAGCCAGACAGTGTATTGCTGAGGAGGGGGTCGACTGGGTGAAAACACCAGCCAAatcaccagatctcaacccagttgagcTGGTTTGGCACGCACTGAAGGAACTCGTCAGATGCAAGACCAAGCCAGGGAGTAAAGATGAGCTTCCTAAGGCCATAGTGACTttctggacagactaaagcagCCTGCCACAGATACATCGAGCACCTTCAGAAAGTTATGCCAGCTGTAGTTGAGTGTAATAGAGGCTCATCTGGAATGTAGCAAATTTATTGTACTGTTGCcattaattagtaaataaacTGCTTGACCACAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390580 lncRNA upstream 15710 9676983 ~ 9679949 (+) False gnal
TU390573 lncRNA upstream 94819 9600608 ~ 9600840 (+) True G329689
TU390569 lncRNA upstream 119955 9575389 ~ 9575704 (+) True G329685
TU390437 lncRNA upstream 126987 9565693 ~ 9568672 (+) True G329564
TU390455 lncRNA upstream 204114 9491274 ~ 9491545 (+) True G329581
TU390583 lncRNA downstream 4920 9719659 ~ 9723811 (+) True G329697
TU390595 lncRNA downstream 11818 9726557 ~ 9728572 (+) True G329701
TU390593 lncRNA downstream 16198 9730937 ~ 9731833 (+) True G329699
TU390613 lncRNA downstream 17723 9732462 ~ 9732727 (+) True G329718
TU390614 lncRNA downstream 18367 9733106 ~ 9733506 (+) True G329719
XM_026924859.2 mRNA upstream 8168 9621680 ~ 9687491 (+) True gnal
XM_026924861.2 mRNA upstream 17458 9621679 ~ 9678201 (+) False gnal
XM_034298194.1 mRNA upstream 133470 9510608 ~ 9562189 (+) False sycp2l
XM_026924215.2 mRNA downstream 141443 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA downstream 141443 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA downstream 141443 9856182 ~ 9937252 (+) False cdh19
XM_026938045.2 mRNA downstream 468052 10182791 ~ 10340953 (+) False LOC113541200
XM_034298136.1 mRNA downstream 468052 10182791 ~ 10340953 (+) False LOC113541200
TU390118 other upstream 839383 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 876392 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 880099 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1029823 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 1210826 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 76945 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 716594 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 880463 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1159470 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1159470 10874209 ~ 10984209 (+) False acad11

Expression Profile