RNA id: XR_004576991.1


Basic Information

Item Value
RNA id XR_004576991.1
length 527
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id LOC117595807
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18705292 ~ 18706093 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAGGATTTTGAACCCCAGGAATCAGAGACTTGCTGAAAGTTAACTGTTCTGGCCTGCTTTTTGCGTCTGGTGTCACTGGTGGTGACAAAGCCCACCTGAAACCCTCGACCTCGCCAATTTTATCACTGTATTCACGAATCCTTGAGTCCGTGTGGGATTTGAGTGATCTACTGTAACGCACAAGAGTAACGAATAACCGCCGGTGGAGAGGAAGTGAACACAGAAACGCAGCGAGCGTTGCTGGGTGCTTCTTTCGGATTTATCCGCCTTTCCCGGCGCTTCCCTCCTGCAGCTCTGCGATCCCAGGATGTTTCATCTTCTTTGGGGAATTTCATGGCAGTTAGTCCTTGTCATCAGTGAACTTCGCAACGTAATAAAACACtgcctccattttttttactactctTTTTTGTGGACATATCTGAGGCCGGATTCCCTCCCGTTACTGTTTCCTGTAGTCGTGTCCGTGTGTTATCTCATACACCTAATAAAAAAGCCGAGGCTCCTGTGGGAGATTGGAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404150.2 lncRNA upstream 23469 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA upstream 24794 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA upstream 120537 18543390 ~ 18584755 (+) True LOC113541128
TU395933 lncRNA upstream 123323 18543362 ~ 18581969 (+) False LOC113541128
TU395840 lncRNA upstream 174385 18500783 ~ 18530907 (+) True G334219
TU396027 lncRNA downstream 16323 18722416 ~ 18747477 (+) False LOC117595806
TU396028 lncRNA downstream 36925 18743018 ~ 18747477 (+) True LOC117595806
TU396029 lncRNA downstream 54996 18761089 ~ 18854003 (+) True G334386
TU396219 lncRNA downstream 226409 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 226956 18933049 ~ 18933251 (+) True G334575
XM_026938176.2 mRNA upstream 162532 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA upstream 162532 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA upstream 162936 18534281 ~ 18542356 (+) False hnf4g
XM_034298018.1 mRNA upstream 177597 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 177597 18523279 ~ 18527695 (+) True LOC113541230
XM_034298302.1 mRNA downstream 5955 18712048 ~ 18733080 (+) False LOC117595806
XM_034298301.1 mRNA downstream 10217 18716310 ~ 18733080 (+) False LOC117595806
XM_034298300.1 mRNA downstream 10217 18716310 ~ 18733080 (+) False LOC117595806
XM_034298303.1 mRNA downstream 16294 18722387 ~ 18733080 (+) False LOC117595806
XM_034298299.1 mRNA downstream 26867 18732960 ~ 18788585 (+) True zfhx4
trnaa-agc_16 other upstream 325278 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 325918 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 381997 18315358 ~ 18323295 (+) False mtfr1
TU396386 other downstream 633113 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 633113 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 633113 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 633113 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 633113 19339206 ~ 19427936 (+) False dap

Expression Profile