RNA id: trnaa-agc_15


Basic Information

Item Value
RNA id trnaa-agc_15
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnaa-agc_15
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18379302 ~ 18379374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395716 lncRNA upstream 54417 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA upstream 54478 18302862 ~ 18324824 (+) False G334120
TU395656 lncRNA upstream 175622 18203063 ~ 18203680 (+) True G334077
TU395657 lncRNA upstream 176397 18200395 ~ 18202905 (+) True G334078
TU395608 lncRNA upstream 270498 18085319 ~ 18108804 (+) True G334032
TU395829 lncRNA downstream 56347 18435721 ~ 18437406 (+) True G334209
TU395830 lncRNA downstream 59775 18439149 ~ 18439446 (+) True G334210
TU395831 lncRNA downstream 60881 18440255 ~ 18440656 (+) True G334211
TU395842 lncRNA downstream 95310 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 121409 18500783 ~ 18530907 (+) True G334219
XM_026938225.2 mRNA upstream 1106 18372722 ~ 18378196 (+) True dnajc5b
XM_034298031.1 mRNA upstream 56007 18315354 ~ 18323295 (+) False mtfr1
XM_026937924.2 mRNA upstream 162096 18214863 ~ 18217206 (+) True bhlhe22
XM_026938136.2 mRNA upstream 281387 18087647 ~ 18097915 (+) True ythdf3
XM_026938188.2 mRNA upstream 395882 17973204 ~ 17983420 (+) True lipib
XM_026938222.2 mRNA downstream 917 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA downstream 1071 18380445 ~ 18390865 (+) False trim55b
XM_034298263.1 mRNA downstream 16853 18396227 ~ 18432150 (+) True si:dkey-97a13.12
XM_026937814.2 mRNA downstream 31262 18410636 ~ 18432150 (+) False si:dkey-97a13.12
XM_026937813.2 mRNA downstream 41612 18420986 ~ 18423560 (+) True rrs1
XR_004576961.1 other upstream 56007 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other upstream 56007 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other upstream 56007 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other upstream 56007 18315683 ~ 18323295 (+) True mtfr1
TU395491 other upstream 386288 17986762 ~ 17993014 (+) True G333943
trnaa-agc_16 other downstream 568 18379942 ~ 18380014 (+) True trnaa-agc_16
TU396015 other downstream 313775 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 959832 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 959832 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 959832 19339206 ~ 19360737 (+) False dap