RNA id: trnay-gua_3


Basic Information

Item Value
RNA id trnay-gua_3
length 73
RNA type tRNA
GC content 0.55
exon number 2
gene id trnay-gua_3
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18379036 ~ 18379121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395695 lncRNA downstream 166907 18211916 ~ 18212129 (-) True G334110
TU395660 lncRNA downstream 174811 18203071 ~ 18204225 (-) True G334080
TU395659 lncRNA downstream 176136 18141428 ~ 18202900 (-) True G334079
XR_003404169.2 lncRNA downstream 269966 18107697 ~ 18109070 (-) True LOC113541306
TU395620 lncRNA downstream 279750 18094503 ~ 18099286 (-) True G334042
TU395807 lncRNA upstream 9732 18388853 ~ 18427075 (-) True G334191
TU395861 lncRNA upstream 56637 18435758 ~ 18436522 (-) True G334235
TU395875 lncRNA upstream 82835 18461956 ~ 18464554 (-) True G334248
TU395876 lncRNA upstream 82835 18461956 ~ 18464554 (-) False G334248
XR_003404163.2 lncRNA upstream 95545 18474666 ~ 18478793 (-) True LOC113541286
XM_026938218.2 mRNA downstream 15457 18326095 ~ 18363579 (-) False pde7a
XM_026938217.2 mRNA downstream 15457 18326095 ~ 18363579 (-) False pde7a
XM_034298174.1 mRNA downstream 15457 18326095 ~ 18363579 (-) False pde7a
XM_026938216.2 mRNA downstream 15457 18326095 ~ 18363579 (-) True pde7a
XM_026938220.2 mRNA downstream 32880 18326095 ~ 18346156 (-) False pde7a
XM_026938226.2 mRNA upstream 12250 18391371 ~ 18392978 (-) True crhb
XM_034298307.1 mRNA upstream 58393 18437514 ~ 18449227 (-) False mybl1
XM_026938290.2 mRNA upstream 58393 18437514 ~ 18449227 (-) True mybl1
XM_026938173.2 mRNA upstream 100558 18479679 ~ 18482400 (-) True LOC113541285
XM_034298212.1 mRNA upstream 104266 18483387 ~ 18490581 (-) False ppp1r42
TU395529 other downstream 452201 17925075 ~ 17926835 (-) False zmp:0000000991
XR_004576970.1 other downstream 462480 17909938 ~ 17916556 (-) False c22h11orf65
TU395488 other downstream 470224 17907894 ~ 17908812 (-) False LOC113541127
XR_004576994.1 other downstream 1139930 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 1239351 17116098 ~ 17139685 (-) False zbtb47b
trnay-gua_4 other upstream 528 18379649 ~ 18379734 (-) True trnay-gua_4
TU395863 other upstream 63234 18442355 ~ 18442995 (-) False mybl1
TU395862 other upstream 65537 18444658 ~ 18520205 (-) False mybl1
TU396861 other upstream 1196987 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 1221606 19600727 ~ 19603693 (-) True G335165