RNA id: TCONS_00008821


Basic Information

Item Value
RNA id TCONS_00008821
length 894
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_004222
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32809971 ~ 32942872 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAAACTTTCTTTGTTAGTTTGCCATCAGCATTAAAtaccagaagaagaagaaaacattACAACCTGCTTTACAAGTCATATTAGATTAGAAATTagcatttgctttattttggtgACAATCAGCCACTGAGGTTTCACAAGCACCTCTTACGTCTGATGTGCCATCGATGTAATGATCGGACTTCGCGGCAAATGAATATACCTGACAGCGGACAATCTATGCGACATTATGTCACCAAAATGGGGACTTGAAGGAGGACCACAGGACTTAAGGAGGCGTTTGGGACGGAGCCCATATTTGCATTGGCCAGACATGACCTCATGATGACTGGTGAACTCCATCAAGGACAACATCTGATTCATATGCTGATGCTAATGGACCGATGTGGCCCTTTCCAGATCCTCTTCATTAAGTAAATGCACTTAGCGACTTATAATAAACAGCCTCGTCTGGATTGGACACCACAGATCTGAAATGATAATCAAAAACCTACCACTGGTGATGAAGTAATGGTTGCCAGGTTACGGCTTCTTGAAATGCACAGTCATAATTATTTGGAATAAATAACAAGAGGCCTATTGAAAATGGACTTGACGGAAGATTGGGATTCAGCTCATGGAAGAATGCAGAGGTAGCCATGCTCCGATacccgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacgcACACAGAGAGTCTATATCAGGATCCATTAATCATATCACCTCATTAAAACACAAGCGCAGGAAGGCTGgcaagtgtgtgagtgtgtattttaCATGTGACTGTTtgttaccagaaatttaaatcttaatttgtTTAGTGAAACAGCTTAATGTGTGTGAaatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008073 lncRNA downstream 246249 32467184 ~ 32563722 (-) False XLOC_004218
TCONS_00008820 lncRNA downstream 246249 32535904 ~ 32563722 (-) True XLOC_004218
TCONS_00008819 lncRNA downstream 246267 32535904 ~ 32563704 (-) False XLOC_004218
TCONS_00008817 lncRNA downstream 246269 32457316 ~ 32563702 (-) False XLOC_004218
TCONS_00008818 lncRNA downstream 271562 32467184 ~ 32538409 (-) False XLOC_004218
TCONS_00008824 lncRNA upstream 1848 32930519 ~ 32932627 (-) True XLOC_004223
TCONS_00008825 lncRNA upstream 4100 32932771 ~ 32942872 (-) True XLOC_004222
TCONS_00008826 lncRNA upstream 48611 32977282 ~ 33064553 (-) False XLOC_004224
TCONS_00008476 lncRNA upstream 49283 32977954 ~ 32982868 (-) True XLOC_004224
TCONS_00008478 lncRNA upstream 234509 33163180 ~ 33179795 (-) False XLOC_004225
TCONS_00008074 mRNA downstream 86120 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008072 mRNA downstream 937343 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008070 mRNA downstream 1533891 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA downstream 1533907 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008068 mRNA downstream 1575387 31218956 ~ 31234584 (-) False XLOC_004213
TCONS_00008079 mRNA upstream 669542 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 669943 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 917769 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 932506 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008083 mRNA upstream 935597 33864268 ~ 33868881 (-) False XLOC_004231
TCONS_00008075 other downstream 72378 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 1637717 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 2301180 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 2445147 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 2654136 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008078 other upstream 442580 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 1037487 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 1426873 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 1537724 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 2296351 35225022 ~ 35225139 (-) True XLOC_004254

Expression Profile

//