RNA id: TCONS_00008476


Basic Information

Item Value
RNA id TCONS_00008476
length 368
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_004224
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32977282 ~ 33064553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTATTGTTATTGATGTCTAAAACAATGGCAGAAGCGCATTGATGGAGTGGCAGATTATGAATGGGAAAGGAGCTGATGGGGTACAATGGAGACGAGAGGTGCAAGCCGATTATCGACGGCCTGACAGTGTTTTCCGTCACATTGACTGACAGAGTGACATTTGTGAAGATGGAGTGTGAGTGAATCCTTTAGCTCATCCGCACATGTTTTCTCCTGCTCTTTGCTCCGCTACTACACCGTCCACAGCTCTGCTCCTCTGGCTTCCAGCCGGCCTGACCTCTCAGCAGTAATTCTACTCTTACATGTAGGCTGAATCGATTCCAGAGAGCCAGCACAGCTAATTCAAGgtcattttcacattatttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008825 lncRNA downstream 35082 32932771 ~ 32942872 (-) True XLOC_004222
TCONS_00008823 lncRNA downstream 35117 32927279 ~ 32942837 (-) False XLOC_004222
TCONS_00008824 lncRNA downstream 45327 32930519 ~ 32932627 (-) True XLOC_004223
TCONS_00008821 lncRNA downstream 49283 32809971 ~ 32928671 (-) False XLOC_004222
TCONS_00008478 lncRNA upstream 180312 33163180 ~ 33179795 (-) False XLOC_004225
TCONS_00008477 lncRNA upstream 180312 33163180 ~ 33179795 (-) True XLOC_004225
TCONS_00008076 lncRNA upstream 207790 33190658 ~ 33191398 (-) False XLOC_004226
TCONS_00008077 lncRNA upstream 207790 33190658 ~ 33198604 (-) True XLOC_004226
TCONS_00008827 lncRNA upstream 322264 33305132 ~ 33345008 (-) False XLOC_004227
TCONS_00008074 mRNA downstream 254103 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008072 mRNA downstream 1105326 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008070 mRNA downstream 1701874 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA downstream 1701890 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008069 mRNA downstream 1751376 31220626 ~ 31226578 (-) True XLOC_004213
TCONS_00008079 mRNA upstream 615345 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 615746 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 863572 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 878309 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008083 mRNA upstream 881400 33864268 ~ 33868881 (-) False XLOC_004231
TCONS_00008075 other downstream 240361 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 1805700 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 2469163 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 2613130 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 2822119 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008078 other upstream 388383 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 983290 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 1372676 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 1483527 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 2242154 35225022 ~ 35225139 (-) True XLOC_004254

Expression Profile

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