RNA id: XM_026916720.2


Basic Information

Item Value
RNA id XM_026916720.2
length 2019
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC113528266
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 205480 ~ 210705 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCGGAAAGGTAACCTGGCAACCTGATAACCCCGCCTCTTTCGGTGACCAGTTCCGGGTTATAGCGGATCCAGTGATCCAGCTGTGAGTAGCTCTCTCCCGCTGGATGCTGGTGTgtggacagttaatgacagctCTTACAGTTTTTTAAACTCCGTGATTAAAACTCTCACTGTTCTCTGCTCGTCTCATTGAGCAGGTTTATTAGCGACTCCGCTCGTTAGCCAGTTAGCTTAGCTCTGAGCTAGCCTCGCCTGCTTCGGAGATGTTTTGGAGCAGTTGTGTGTCTAATAAAGAAATGAAGAGCTTTAACATCCTTGTGATCCTGGTGCTGGTTTTGACAGtattGGTTTGTGCATCAGGTGATTATACGATGGCCAAACTGAACCAGACCGCTACGCTCCTCTGTACTGGTTCATGTCCTGGCTTAATGGAATGGACCCAGCCCCGTAACAAAGACATGCCTGTGGCTCGGTGTAATCAGACAGAATGCAGGCCAGAGAAGGGATATGAAATGTCTCATGAGCAGTACCTGAAGGGGAATCTGTCTCTCACCATCACTGCAGTAGATTACAGTAAGAGAACCTGGTACAAGTGTCGCTGTGATGGCCGAGACGTCTGTGACGTGAACCTTCGGATTGAGCCTCTTGAGCTTACCAGAAAGATGAAGCCTGGAGAACCCCTCTTCCTGGAACTGCCCATCACAGAGAACGTTAAGGTCACCTTTAACCAGAGCGGTGATGATGGCAGTCAGAGGTCTGTCCTAGTGTGTACAGCCGATGGTCGTAAACTTCAGTGTGACTCAGAGTATAAGAATAGAGCGTCGCTGAAGTCGTCTCTGACCCTGACTGAAGTGAAGGAGTCTGACAGAGGAGTGTACACTGTGCAGGACACTGAAAATGAAGAGGTCATAGCTACATACACTGTCACAGaggaGAAGCCATGTCCAGACTGTAAGCAGGACAGAGCCATGCCAGCGTGGGGGATTAcactgatagtggtgcagttcTTGGTCATAGCTGTGCTGATAGTTTATCTGGTGAAAAGAAAACCTCCACTCCAGAGAGAACCTGCAGTCAACAGACACACAGTGCCTCAAACGAACGGAAACACCACATACAATACACGAGAACAGAAAGTACAAATACTCAATGACTCCACAAACACTGGAACTTAGAGGCTGTAGTTTATTTTGCTAGGTGATGAAAAGAATAACCAGctgtgagtgacagagagatgaaaacaGCCCTGAGATTGCAATAAATATCCAGCTACTAGTGACTATAAACAGTAGAAATATTTTAGTAACTGTGTGACAGAACGCCCCCTAACACACTCCTCcaccttctcttcttctctttcagcTCAGTAGAGTATAAAAGCTGAATCTCAGAGCTGTTTAGAGATGTTTAGTGATGAACTGCAGACTCCTGAAACTCTGAAACTCCTTTCACTGACTGAATGAGGATCAGATTATTCCTGTTACAGTCCAGCTACTGGCTCCAAGCTGAATATAGAAttcactttattcatttattagtgATTTTAAATCTCCTGATAAGTAAAAGCTAAACGTTCCCCTACACTATAAGCTAAACCTTCCCTTAAACTAACTCAGTTCACATTTAAATCTTAACCTAAACCCTTCCTCTctcccttcttctctctctctctctctctctctctcattttcatttattatattagccttttcttctcttccattTACTACTAAAGTCTCCTCTTCACACTCATCTAATGTCGTTTATCTTTCACTTTTATCCCTTACTGCCTACCTCACTTTCGTCACTTTTTTCTGCCActtgtgacgtgtgtgtgtgacgtgtgtgtgacgtgtgcgtgtgtgtgttatttctccCTGATCCATCATGCATTACTCTTAATCACATGACTTCATCATGTCCGTGTTAGCATTCTGCACTTTTCCTCTTACTGCCTTCATGACTTGGCTCattactgacacacacctcTAACTCAGCTTTACTAACATGGCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411860 lncRNA downstream 64423 139214 ~ 141057 (-) False LOC117595978
TU411888 lncRNA downstream 66667 120309 ~ 138813 (-) True G347652
TU411870 lncRNA downstream 170702 17440 ~ 34778 (-) True G347634
TU411951 lncRNA upstream 118209 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 122537 333242 ~ 333755 (-) True G347704
TU411911 lncRNA upstream 143622 354327 ~ 355340 (-) True G347672
XR_004577162.1 lncRNA upstream 153560 364265 ~ 367739 (-) False LOC113528009
TU411979 lncRNA upstream 184662 395367 ~ 397450 (-) True G347723
XM_034298963.1 mRNA downstream 3490 192549 ~ 201990 (-) True LOC117595911
XM_034298965.1 mRNA downstream 20929 175316 ~ 184551 (-) False LOC113528268
XM_034298964.1 mRNA downstream 20931 175316 ~ 184549 (-) False LOC113528268
XM_034298966.1 mRNA downstream 20938 161020 ~ 184542 (-) True LOC113528268
XM_034299335.1 mRNA downstream 55674 118198 ~ 149806 (-) True LOC117595978
XM_026916717.2 mRNA upstream 10724 221429 ~ 226704 (-) True LOC113528265
XM_026916718.2 mRNA upstream 10724 221429 ~ 226447 (-) False LOC113528265
XM_034299098.1 mRNA upstream 20027 230732 ~ 237272 (-) False LOC117595925
XM_034299336.1 mRNA upstream 28112 238817 ~ 254544 (-) True mybbp1a
XM_026916564.2 mRNA upstream 46822 257527 ~ 260223 (-) True fgf10b
TU411899 other downstream 3519 197392 ~ 201961 (-) False LOC117595911
TU411864 other downstream 80274 87567 ~ 125206 (-) True G347628
TU411852 other downstream 84369 95363 ~ 121111 (-) True G347622
TU411851 other downstream 105818 86663 ~ 99662 (-) True G347621
XR_004577111.1 other upstream 19820 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other upstream 19820 230525 ~ 236364 (-) True LOC117595925
TU411959 other upstream 153301 364006 ~ 367735 (-) True LOC113528009
XR_004577138.1 other upstream 653515 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 866028 1076733 ~ 1079139 (-) True G347960

Expression Profile