RNA id: TU411851


Basic Information

Item Value
RNA id TU411851
length 494
RNA type TUCP
GC content 0.49
exon number 4
gene id G347621
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 86663 ~ 99662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGGAGAGATTTAACATCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTGACGTGCGGCTCGTCATTGAGACTCAAGTGATGAGCCGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCTGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGATACAGTGCAGTCCAGATTATAAAGAGAGAGCGTCTCGCTTCAACACTCTTCAGATTAAAGATGGACATGTCTCTGACAGTGGCAGCTACACAGTACGGGATATAGTGAATGATGAGACTTTAGCCATCTTAAAGGTCCATATGAGAGaagACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGTGGGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411870 lncRNA downstream 51885 17440 ~ 34778 (-) True G347634
TU411888 lncRNA upstream 20647 120309 ~ 138813 (-) True G347652
TU411860 lncRNA upstream 39552 139214 ~ 141057 (-) False LOC117595978
TU411853 lncRNA upstream 75361 175023 ~ 206293 (-) True G347623
TU411951 lncRNA upstream 229252 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 233580 333242 ~ 333755 (-) True G347704
XM_034298972.1 mRNA downstream 6313 73680 ~ 80350 (-) True LOC113524950
XM_034299331.1 mRNA downstream 15179 61601 ~ 71484 (-) False paip1
XM_034299335.1 mRNA upstream 18536 118198 ~ 149806 (-) True LOC117595978
XM_034298968.1 mRNA upstream 19520 119182 ~ 122661 (-) True LOC117595913
XM_034298967.1 mRNA upstream 27328 126990 ~ 134539 (-) True LOC117595912
XM_034298966.1 mRNA upstream 61358 161020 ~ 184542 (-) True LOC113528268
XM_034298965.1 mRNA upstream 75654 175316 ~ 184551 (-) False LOC113528268
TU411899 other upstream 97730 197392 ~ 201961 (-) False LOC117595911
TU411849 other upstream 106831 206493 ~ 210642 (-) False LOC113528266
TU411850 other upstream 106831 206493 ~ 210642 (-) False LOC113528266
XR_004577111.1 other upstream 130863 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other upstream 130863 230525 ~ 236364 (-) True LOC117595925

Expression Profile