Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU411959 |
| length | 724 |
| RNA type | TUCP |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC113528009 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 364006 ~ 367739 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU411911 | lncRNA | downstream | 8666 | 354327 ~ 355340 (-) | True | G347672 |
| TU411952 | lncRNA | downstream | 30251 | 333242 ~ 333755 (-) | True | G347704 |
| TU411951 | lncRNA | downstream | 34398 | 328914 ~ 329608 (-) | True | G347703 |
| TU411853 | lncRNA | downstream | 157713 | 175023 ~ 206293 (-) | True | G347623 |
| TU411860 | lncRNA | downstream | 222949 | 139214 ~ 141057 (-) | False | LOC117595978 |
| TU411979 | lncRNA | upstream | 27632 | 395367 ~ 397450 (-) | True | G347723 |
| TU411984 | lncRNA | upstream | 50619 | 418354 ~ 466255 (-) | False | rusc2 |
| TU412023 | lncRNA | upstream | 160213 | 527948 ~ 619562 (-) | True | G347753 |
| TU412026 | lncRNA | upstream | 196992 | 564727 ~ 619562 (-) | False | G347753 |
| TU412035 | lncRNA | upstream | 267024 | 634759 ~ 638280 (-) | True | G347759 |
| XM_034299337.1 | mRNA | downstream | 81600 | 261639 ~ 282406 (-) | True | adamts12 |
| XM_026916564.2 | mRNA | downstream | 103783 | 257527 ~ 260223 (-) | True | fgf10b |
| XM_034299336.1 | mRNA | downstream | 109462 | 238817 ~ 254544 (-) | True | mybbp1a |
| XM_034299098.1 | mRNA | downstream | 126734 | 230732 ~ 237272 (-) | False | LOC117595925 |
| XM_026916717.2 | mRNA | downstream | 137302 | 221429 ~ 226704 (-) | True | LOC113528265 |
| XM_034299121.1 | mRNA | upstream | 5715 | 373450 ~ 385400 (-) | True | lrp13 |
| XM_034299345.1 | mRNA | upstream | 50572 | 418307 ~ 438443 (-) | True | rusc2 |
| XM_034299076.1 | mRNA | upstream | 72601 | 440336 ~ 469953 (-) | True | atp8b5a |
| XM_034299077.1 | mRNA | upstream | 72601 | 440336 ~ 456090 (-) | False | atp8b5a |
| XM_034299346.1 | mRNA | upstream | 107759 | 475494 ~ 516272 (-) | True | LOC113528156 |
| XR_004577111.1 | other | downstream | 126734 | 230525 ~ 237272 (-) | False | LOC117595925 |
| XR_004577112.1 | other | downstream | 127642 | 230525 ~ 236364 (-) | True | LOC117595925 |
| TU411849 | other | downstream | 153364 | 206493 ~ 210642 (-) | False | LOC113528266 |
| TU411850 | other | downstream | 153364 | 206493 ~ 210642 (-) | False | LOC113528266 |
| TU411899 | other | downstream | 162045 | 197392 ~ 201961 (-) | False | LOC117595911 |
| XR_004577138.1 | other | upstream | 496485 | 864220 ~ 924623 (-) | False | LOC113527995 |
| TU412323 | other | upstream | 708998 | 1076733 ~ 1079139 (-) | True | G347960 |
| TU412226 | other | upstream | 790056 | 1157791 ~ 1410675 (-) | False | G347896 |
| TU412230 | other | upstream | 790056 | 1157791 ~ 1297906 (-) | False | G347896 |
| TU412381 | other | upstream | 988833 | 1356568 ~ 1369462 (-) | False | LOC113524988 |
