RNA id: XR_004577162.1


Basic Information

Item Value
RNA id XR_004577162.1
length 469
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id LOC113528009
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 364006 ~ 367739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGACGTTAAAGAGACGCGTCAGGATTTTCCCGTGATCCTTTGCTGCAGCTTGTCCCTGACCTCTGTCGGCTGTGCGCTAAAAGACGGACAGAAATGGTGCCTCCTGTGCAGGTTTCTCCTCTCATTAAGacaGCCAGGTACTCGGCTCTGCTCGTGGGGCTCATCTACGGCAAAAAGCGCTATGATTACCTGAAGCCCATAGCGGCGGAGGAGAGGAGGAtcgaggaggaggagaagaaagtgAGGGAGGAGCAGGAACGCATCGCTAAACAGCTGGCTgaggCAAACGAAGACACGATCCTGAAGTGAGCGCTCtggagtgtgtgctgtgtttatgGACCCGTTCTGGAGGTCTCGCTGTTCTTCTCTTCGTCCCTCACCTTCCTCACCTTCTTCTACATTAATACCTGCTGTTTTACAATGAATAAGATTTCTGTTTATTAGTAAAATTACATCACTATCCATGA

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411911 lncRNA downstream 8925 354327 ~ 355340 (-) True G347672
TU411952 lncRNA downstream 30510 333242 ~ 333755 (-) True G347704
TU411951 lncRNA downstream 34657 328914 ~ 329608 (-) True G347703
TU411853 lncRNA downstream 157972 175023 ~ 206293 (-) True G347623
TU411860 lncRNA downstream 223208 139214 ~ 141057 (-) False LOC117595978
TU411979 lncRNA upstream 27628 395367 ~ 397450 (-) True G347723
TU411984 lncRNA upstream 50615 418354 ~ 466255 (-) False rusc2
TU412023 lncRNA upstream 160209 527948 ~ 619562 (-) True G347753
TU412026 lncRNA upstream 196988 564727 ~ 619562 (-) False G347753
TU412035 lncRNA upstream 267020 634759 ~ 638280 (-) True G347759
XM_034299337.1 mRNA downstream 81859 261639 ~ 282406 (-) True adamts12
XM_026916564.2 mRNA downstream 104042 257527 ~ 260223 (-) True fgf10b
XM_034299336.1 mRNA downstream 109721 238817 ~ 254544 (-) True mybbp1a
XM_034299098.1 mRNA downstream 126993 230732 ~ 237272 (-) False LOC117595925
XM_026916718.2 mRNA downstream 137818 221429 ~ 226447 (-) False LOC113528265
XM_034299121.1 mRNA upstream 5711 373450 ~ 385400 (-) True lrp13
XM_034299345.1 mRNA upstream 50568 418307 ~ 438443 (-) True rusc2
XM_034299076.1 mRNA upstream 72597 440336 ~ 469953 (-) True atp8b5a
XM_034299077.1 mRNA upstream 72597 440336 ~ 456090 (-) False atp8b5a
XM_034299346.1 mRNA upstream 107755 475494 ~ 516272 (-) True LOC113528156
XR_004577111.1 other downstream 126993 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 127901 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 153623 206493 ~ 210642 (-) False LOC113528266
TU411850 other downstream 153623 206493 ~ 210642 (-) False LOC113528266
TU411899 other downstream 162304 197392 ~ 201961 (-) False LOC117595911
XR_004577138.1 other upstream 496481 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 708994 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 790052 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 790052 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 988829 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile