RNA id: XM_034299345.1


Basic Information

Item Value
RNA id XM_034299345.1
length 10184
RNA type mRNA
GC content 0.48
exon number 15
gene id rusc2
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 418307 ~ 466255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGGAAGAAGGGGAGAATTTTGTCCCGGTTGCTCCAGCGCATTAAAGCGGGTGCAACAACAACACGCCTGACTCGAGCGCTTTGTGTGCGAGTCTCTGCTGCGGGATCAGTCCAGCTGCTGCACATCTGCAGTTAGAACCCGCTGTTTAAAGCGAACCATTTACAAGGACGCGAGTAGCAGGAGTTCGTGAGGCGTTAATGTGGCCGGGGATGAAGGAGAGGATAATGACGCAGCGTCCGGCGCTCACAGCGCGAGCAGCGCTGAACAGTGCGGGGAAAAACCACGCAAACTCCCGCACTGTGAGTCGGGATCCAGCCTCACAggctcaggagagagagagagagtaaaatATGTTTCCTTTCTGTCGAGATGACCTCTTCAGCTTCTTCTATCACACTCCTCACTCTCAACGACCTCGAGTCGGGATTGGGCGTGTGAATTAAACTTCTCTCCAACCTCGTCAAGCTTCGATCTCCGTCCCGTCCCCATCCCGTTTTCCAGAGACGATGGACAGTCCTCCGAAGCTGGCCGGAGAGACACTGATTGTTCATCACATCCCTCTCGTGCACTGCCAGGTTTCTGGTTCGCATCAGCGCTGCGGCAGCCCACTGAGGAAAAGCAACAACCCATTCAGCTGCCCAGAAAACCTCGGCCTGATCCGCACCACCTCGCTTCCTGAGAGGGACGTCCTCCAGCGTGAGGCGCTCGTGTACAGCAGCCTGATCCAGACCTCCAGCTCCAGCGATGCTTTTGAAGATGAAGGgatgagagaaggagagaagaaaggagTGAGAGGTGGAAGCATGGCGAGTGACACTTCCTCTTTCACGTCCAGCAATTCTGAAGAGGCACTTCCTAAAGTCCTGTCGAAGAAGGTGCACAACAGGCCAAGCTCACTCAGACACAATCCCTTCCTGCTGAACGCAGGGGAAGACGAttatgaagatgatgatgacgatgacggAAACAATCTGAATGGATACTTGGAGGATTCTTCTTTTCACTTGCATGGAAACTCGAATGCAGCCTTAGACGACAGAGTGGAGTTGGCTCCGTTCCATCTGCATGACCTGGGCTACAACTCCGGACCATTCCATCTGCATGAATCTTTAGAGAAGCCCTGGAGTTCTGACCAAAAGGGGGCTCCTGGGAGGCATTTTTCTGCCCGTCTCGAGGGTCTTGATCTTTTGGGGCTGGACAGTCAGCATCGCCATGGCAGCAGCGGTTCCACCCTGTCAATGGACTGTGGAGAGCAAGAGTGGGACGACGATGACGACGATCAGTCCATGCAAGGCGGCCGGGGCAGTTCGGAATGTTGTGGATGCTCCCGGACGTATCCCGAATCGTTCCCAGACTTTACACATGGTTACTGCAGCGATTCATCCTGCAACAGCTCTGACGGCATCCTGGTCAACTTCAGTACCATCTACAACAAGACGAACAACATCGTCCCTGACAAGCCAATCAACCTCAACAGCTCCGCCGATCAGTCCTGCACCTCTTCTGTATCTGAGCCAGTCTGTATGGGCGGGGCCGAATATGGGAGTGGGGGCGGAGCTTTTTACTTGGACTTGCACAGATCTCCAACAGAAGCTCCCCAGGAAGTCACCGACCTTCCGTCTTCCTCTTCCTGCCTATGCTCTTCCCAGCCACAAGGTGGCACAGTGGAGCTTGACGCTAACTGCAATTCCTATCACAACCACGAAGGTCTGTTACCCTCCGAGACCTCGGCCAATGACCTCACTTCCTGTATGCAGAGCCAGGCACGGCTGGTTGTTGCAACCCAGAACTACTACAAGCTGGTAACCTGCGATGTTTCATCACATTCCTCCCCAAGTCCTGCAGGATCTTCGGTCACAAGCTGCTCTGACGAACACAGCAAAGGAAGTCCCACCCAGCCCACAGAGTACTTCCTGTTTAGGCACACTAAAGAGCAAGAAGAGGAGGACGAGAGAGAAAATGCACAGGTCAGCACCCAAAAGCCATGTGAGAAGAAGGCGGAGCCACTCATGGGTAATGCCGACTCCATGCATTCAAATGTGATTGAGGGACAAGTGTATGTCAACATCTCGCCacctgtgggcggagcttcgGTCGGGGCCCGTCTTCGTTCCCGTAGCTACGACCGGAACCTGGACAAGACCCCACAGCCTCGTCTGGGCTCTCTGGAGCGCATGCTAAGCTGTCCTGTGCGTCTCAGTGAGGGTTCCACGAGGCCCGCCCCTCCACCACGTGTCACTTCCTTCGCTGAGATTGCAAGGAATAAAAGGAAGAACGGCGGCTCTCCTTCTCAGAAGAGTAGTGTTGAAGCCTCTTCTGTTCACTCGCACTCGTCTGGAGAGTTCTCCCCGATTCACGAAGATCTGACCTCACTGATAAGCTCCCCCCACTGGAGCGCATCACTTAGAGTCTCGCCGGGGGGAGCAGGGAGAGAGACGCGGACCAAAGCAGAAGGTGGACTGTCCAGTTCTGCTGATTCGTCCCCAGCGGTGGTGCGCTACAGTAAAGACCAGCGTCCCACCACGTTACCCATCCAGCCCTTCACCCTGCAGCAGCAGTTCGGGAAACCGCAGCCGAAGCCCGTCCTCCCTCTGCTGGACGAGTACATCAATCACATGCAGGCTCGTTTCGGCTCCGCCCCATCCGAGCGGGACGAGGAGGACTCCGACGACGATGGTCAGCGTCCCCGGCCGTCTCCTCTGGGCAGTTATTCGCCGCCCCGCTCCCTCTCCTGCCCTGCCCCCCTCTCTCACACCCCGACCGGCATTGCCCCAGCCTCCAAGCTGGCCCCACTTCCCCCGACTCCTCCCCCTGCCACCAGGGGGCACTGTTTCCACCGAGCCAACCGCAGTACGTTACCCACGCTGCCCAGCTCCGGCCTCAGTCCGATGGCACAGCTGGAACCGGGGCGGCAGGAAGAGGAAGTGAACGTACCTCCTGTGTGTATGATGCAGAGAGCGCACAACGCACACCACCTCTCCCCACAGGCTCTGAAATGGAGGGAATACAGGCGTAAGAACCCTCTGGGtgtggagaagaagagagatgtctgctcttcctctccctcctcctcctcctcttcttcctctctgtctgcttCTGCTGCTTTGACCGCCAGGAGTCGCACAGTGAGACGCAACGTCTTCGATTTCCCTCCATCAAACCACACGCTGAACTTCAGCAGACTCAACGgtcaGTCACTGAGGTGTTACAGTGACCTGCTGCCGGATTATTTCTCTCAGACGGAGCGCCCCCCAGAGGAGTTCTGCCTCTCACCTGACGCCACCACTGAAGAGTCCATCTCCATCGACCTGCATCAgaagagaggTCTGGTGAAGGCCATAAACACAGCAGTGGATCTGATTGTGGCTCATTTCGGCACCAGTCGGGATGCAGGAGTAAAgGCGAAGCTGGGCAACAGCTCAGTGAGTCCCAACGTGGCTCACCTGATCCTGAAGTACCTGTGTCCCGCCGTGTGTGACGTGCTGCAAGACGGCCTGCGAGCGTACACTCTCGACATCATCATTGGTCAGAGACGCAATCAGCCCTGGAGCGTGGTGGAGGCGTCGACACAGCTCGgtcccTCTACACGCGTATTACACAGCCTCTTCCTGAAAGTCAGTCAGTACTCAgagctgaccaatcacagcatGAGACTCAACGCCTTCATCTTAGGACTCTTAAActtACAGTCTCTGGAATTCTGGTTtaatcacatatacacacatgaaGATATCATAGCAGCCCACTACCACCCGTGGGGTTTCCTTCCCCTTTCTCAAGGGGCGTGTCAGCCAATGTTTGAGGAGTTGCTGCTCCTGCTTCAGCCGCTGTCGCTCCTGCCCTTTGACCTCGACCTTCTGTTTGAACCTCATCAGCTGCAGAAAGGTCAAGAGCACCTGAGACGCAAAGAGCTGCTCTGCTCCACCCGCCAGGGCCTCGACCAATCAGCTCGCTCCACGTTCCAGCTCATGAGGGGCCCGAAGGAGCCTATGCAGCTAAAAGAGGAGGCGGAGTCTAATCAAAAGGGGTGGAGCTTCACAGAGGCAGGTTTGCATTGGGCGGAGTCTAAAAAACAAGTGCGGAGAGTGAGGAGGAGTGACAGGGCAGGTAGCGAATCAGAGAGCGAAGGGCTCGTGTTGCACGCAGGCAGGATGAATGGAGTGGGCGGAGAGGacgaagagagggagaggaggagggagcgggagagagagagagacggagagagagacaggttaAGAAGCAAGCAGGCAGGCTGGTGGTTCCAGCTCATGCAGAGTTCTCAGGTCTACATCGAGAACTCTGCTGAGGGCTCCAAGTTTGTCAAGTGGGAGAAGCGCAAGAAAGGAAGTGGGGCTGAGGGGCGGAGACAAAGCAACCCGCCGCCGAGAGTGGGCGTGGTCGAGGGCGCAGAGGCTCATCACGCGACAGTCGAACATCCAGAAACTACAGTGTGCAACGACACGCGTCATACCGCCAGCACCAGAACCAGAACCTTTCCCCAATCAGAGCCGTCCAAAGTGATTAAAGGGAAGCCCTCTTGGATGGGCAGTCCCCCGGAGTCGGTGCTGAGTGAGCTAAAGAGGACGAACGAGACGCAGCCGGAGGGGGCAGAAGCGGAAACGCAGGCGGCTCAGAACCTACGCTGGGGCCGACTGTTTGGAGCCGGAAACATCagcaaaacagagaaaacagaaccCAAATCATCCAAGAACCCAAAAAGCAGGCTGCCGTCGGGTTGGCTGAGTCTGGATCGAGCCATGCTGGATTTGGTGGTGCAGTCTGTTGGGAAAAGGGCGGAGCCTCaggcattaaacacacacagtgcagagaCGAAACACAGCCAAACACAGCAGGACCAAACGCAGGAGCCCAACAGACAGACGACAGCTGCAcgTGAGGTGAGGGCATTGTGCCACCACATCGCCACGGAAACAGGTCACCTGAGCTTCCATAAGGGCGACGTGCTGCGGGTCCTGAGCAGAGCggactctgattggctgctgtgcGCCCTCGGCGACGCCCACGGCCTGGTGCCGATCATCTACGTTACGTTAAACGACGAGGAGAGCGAAGACCCTCGAGGgtcacagtgaacacacacacacacacacacacacacacacacacacacacacacacagtttgggATGTGCATCTTCATTCAGTTTGTGATTCTGTGCTTAAGGAGTAAATCCCAGCTCTGATAAAGCGACAGGATAAACAAACATGGCTAACGctaatcttaatcttaaataCGTATGggtattgtaatatttattgcCTGCTGTAAGATAACATTTGATAACATTTGCCATGcaagagaaacacaaaaaaatcagtgtCATGAAACTACAAAAGATCATGCTAGGCGCTAATACTATCCCTCACTGTTAGCCGTGTTAGCATTGCCAAGTTTCCCGCTGACTTGTTGCTAAAACTatgtagctctctctctctctctctctctctctgtctgtgatcTTTATTATGGTATTacgacaggtttttttttttttttaatgcacattcAAGACGTGATTAGCATTTAGAAAATCTAGCAACCCAACACACTCGCAAAAGACGCGACGTCGTCACAGCAGCCCGATCTCATGAACATGTTAATCGGCGGCAGTGTTGCTCTCGACGCCTGTAggactgtatgtttttatagaAACACGTACGATTTCGTGTAAATATATGGTCTGACATTGTGTACGTAAACCATACAGAAGCAGTCATAATGAGGTTATAACTAGGGCCAGAGCGATATGAACATGCTCATGTCTACAAAAAAACTTCCTCCTGTGAGTGATTAGCGCCCCCTGGGGACCAACAGCGCGTCATGCTaactgttccaaaaaaaaaaaaaacgtaaaattTGAGAAGGTTCAGCTGCACAAATCTGATTTCTTACAAAAGTCCAGATAATTATTAACACGACTGAATAACGATGACTGTTAATCATTACTGATTAGTTTATACCTGTAACTAAGACGATTCGaatttggttgttttgtttcgtAGAGGTGCTTCACGTTATCCCTTACGACGAGCGCCAGACTCTGAACTGATGAAACGTCCATTTTGAATTTGACGTGaggagcacaaacacacacttctccgTCCAGTCATCTTTAAACATCTGTTTATGTCATCGACTTTCCTTTAAAGAAGCCATGTTATCAGTTAACTAAACAAACCagagagtgtaaataaaattaaaaacgtACCAAAGtgtatgaaagtgtgttttCACACTGAGCCAGTCTTTAGctctgtagctagtctctggtccagTTAgatgccttcagctaaataatttacataactGAATATGATTGGAGAAACTAAAACAGAGGATCTGCCAGAAGCTAGAAGAAACTATGGACATACGTTTATCAGCTCTGTTACAGTTTTTTTCTCGAGTACTCGGGTCAGTCTGCGTCCGGACCACGGTCCGATAACTGACGAGCCCTGATACAGAACATTTAAAGAGACGCTGCTTTATCTTTCGCCTCGACACCCTTAACATTGACATATTGCTCTGGCGCTAGTTATAACAAACGCAACATATTAAACGTAAAGATTAGCGCACGTCCGTAGTTCACGTCCCAGTGAGCTCGGGTGTGGTGAAGGTTTGCTAAGCAGGTCCTTCATGACgttatccttttttaaaaaagagtgtTGTGTTGATCTATCGCAGTTCTTTAGGTAACGTTAGCGCCTGCAGTGATGTTTCTCGGAGTTACGGCagcttatttaatttaatggttCATTTTATACAGCGATAGCAGCTAACTACCAAACTACTAAGCTATTTATGTTTACTTCAGTGACAGCCTCTCACAGGAATGCTAGCTTTAGCGaatatgcacatttttattttattttttttaaattgttaaccTGTTTTCATTTAATGTGGCAATATGTGACGTTTATGTGAGCAGTATAGCTAACCATGTGGGTGATTTTAGCCAATGAGACGTCAGGGCGGAGCAGTTCGGCGCAGGGACTCTGTATAACGTTGAGTTAGCAACTACACCATCTGTATTACTGAATACACATGAAGGGGAATACATAGACACTTCCTGAGACACACCAGTGAACTCTTCGCATCAACTTCCTgctgttctgaccaatcagaacgctTTAGAGCAGGACTGAGGGCGGGGCCTGGGAATTTCTTGCATGTCAGACTATTGACTTGAGTTTAAAACTGAACTGGAATGTGTCTCGTATTCAACGCCAACCTACACGTCTTCATTTGCCCCGCCTACAGACACCACCTTCTGCTGGAGGAGGGAAAGGAGGAAGCTGGCACTAGCTTTAGCCTTGCCGTTAACATTAGCTGCTTAACGAACACTATGGGTTTGTGTATTTTGACTCTTTATTTATAACGCATTTTAACtaggcatgtgccgatattCAGGTGCACGATATATCGTGATATTCGTCAACACGCACATTCAGGAGGAGAGATGAAGTCTGTCCAAATAAAGTCTGGACAAATTTAAAGACGTGTCTTTCTCAGAGACGACAATCCTGTAGATCTTTTCACTGGACAAGAGTGTCATAAGAGCTGTGTAGAAAACATGGAGTACGGAATATACCAGGGTGAATTTATCGCTAACGTCGCTCGTAAACGTggtattttcacatttaaacactgaaaattaGAAAGTTAAATATCGGCACATGTCTACTCTTTTCCAGGGACATTTTCCAAGAGCGACCAACTTACTAATAGGCAAGTGAAAGAAAATAATTGTATGTTTAATGGAGTTTATTGTACTGAAGGCATCATgggaatgtatttattattgtatttattgttctgtctGTAAGGCACCACTTTAACGTCActagacctaaaaaaaaaaaatgtcaaatatccACAACGGATAAAACAGGAATCTCTGACTGACCTAAAACTGTTCGCTGtgttaaacaggaagtgtcaGTCATGGCGTACTGAGCATTTATGGAACAGTTTGGGGGAAAAGGCAAATTTTGTGAGTCAAGTGCCAGTAATCTGACGTATACAGTAGGGATGGGCGATATGATCAGAACATCACATCACGATACTTCAAagcatttctatgatacacgaTATGTAATTTATGATTTAACtgaaatgaggggaaaaattctgtataaaattttaacattttacaattttaaagattcagctCAAAACATTAGCATCTAATCAGcgtttgtaattgttataaaaatactgacgATGTCGGAGagatctcagaaaagtgtattatcATCATATCGCCCTGCTGTAATTACAGGATGCTGTATACTGCGCACAGACGAGGCGTTTATCgtgatatgaaaatgtaatatcagcacatgcctagtgcctaatatgttaatatttttatttacaaacgAACCCGTGATTTAAAAGGGATTTTCAGCTGTGGCTTTGGGAAATGTGTCATTATTCTAAACGCTAGCATCATATTGCACACTAATTTATTTACGTCTTCACTTGCCTGTAAGTGAACCTGACTCGTAAGAGAATAATGTTATTACTGAAAAttatattgatttgttttttacagATTACGACAACAGCTTTGGTTGACCATGTcactgttataattattattattttttttttttttaagttttatcattttatattattttctaatacagaaaatgcattttattcatgAATTTATTCAGTCACGCTTGTAAATATGTGACATTCTTGAAAGACTATGCTAATGTTATTTGAAATTGTTATTAACAGACGTTACTTGATAGAATTAACATGTAATAATACGTCTATTTAAATAGGCTGTACAGAACAGCACTGTTATACGGGAAGTTGTTAGAGGAAGTATGTTCTAGAGTTTAGTTTTGCTCTGCATTATGTTTGTCACTTTCACTCTTCTgtcacctaaacacacacacacacacacacagagacagagagagagagaagagagagagagagagagagagaggttgatAATAGACTAGTGCCTTTTTGTATCACAGCGACGCTAACTTCAGGCTTCAGGGCGGTAAACGTATTGtagggacagacacacacacgtcttgTGATGGTACCAAAGGAGGAAAATATGAAATCATAGTAATCTACGTTTTCAAAAAGctgtaaattaaatacattttctacaTTGTTTTGCTGAACTGTTTAAGGCTTTGTGCGGTTTAGAGTTTATATCCCGAACTTTCAAAGCGACCAGGCCACAGGTCTGAGAACAGTTTTGAATCAGTGATTAAACCCAGACAGATGTTTGTCCGAAGCAAACGGAtcctgcgttcacactagcaagcaattCAGcgacattttaattttctcaaTTAATTTTCAGCGTCATTCTAGATTCTCAGtgttatgcaaattaggtatgatgcagtaaagcgacaaatccaaacaatcgGCTCGAACGATTCCTCTGACTAATCCTATGGAACTTACGGTccgatgtttcttcagttctttCTTCGACTCAGATCTTTAGCTCATATCTGAAATTACTATTTGatgcaaaaatggaaggaaaactTGGACCCATGCTACAAATGTGAACGAAAGATGAGGATAAAACCCGACAATCCCGATGATGGTGTCTGTCAAATTGAAGCAATGACAGCGCCATctttacatcatcagtaaacaaaaacaaaattacgACTCAACACCAGTCAATTCCAAACAAGTTCCCCGAGCTGCCACAACTGCGATTTGTGATTCTGATTCAAGCCCGTCTACTATCACAGACCCGAGGACCAAAACTGAGCAGTCAGCTAAAGATCCAGAGCCGAAATAGAAAGCATTAGATTAGATGCTTACATTAGATTGAACAAATACCCAGAGACACAAactaaattcaaattaaatgtaGCACCTGGATTGGATTTTTGCGAACGTCTCGAATAACGAATCTGTAGTTCAGCTGATTAGATGGAGAATATCCAGATGAAAGTACGAGAAAGTAAAAGGAAGTGTTTTTGTAGCTCATCAGATCTCAGTTAGTGAGTGaagtttgttttctctctctcagctctgttCCTCACATGGGGCTAACCTGTTTCAACTCTGAAACATGCTGTACAGTAGAAAATGAGGAAAGCACATTTAACATAAAGGTGTTGATGGCTGTAaagtctacaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K23291 RUSC2; iporin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411979 lncRNA downstream 20857 395367 ~ 397450 (-) True G347723
XR_004577162.1 lncRNA downstream 50568 364265 ~ 367739 (-) False LOC113528009
TU411911 lncRNA downstream 62967 354327 ~ 355340 (-) True G347672
TU411952 lncRNA downstream 84552 333242 ~ 333755 (-) True G347704
TU411951 lncRNA downstream 88699 328914 ~ 329608 (-) True G347703
TU412023 lncRNA upstream 89505 527948 ~ 619562 (-) True G347753
TU412026 lncRNA upstream 126284 564727 ~ 619562 (-) False G347753
TU412035 lncRNA upstream 196316 634759 ~ 638280 (-) True G347759
TU412100 lncRNA upstream 204543 642986 ~ 643487 (-) True G347821
TU412114 lncRNA upstream 234634 673077 ~ 676630 (-) True G347833
XM_034299121.1 mRNA downstream 32907 373450 ~ 385400 (-) True lrp13
XM_034299337.1 mRNA downstream 135901 261639 ~ 282406 (-) True adamts12
XM_026916564.2 mRNA downstream 158084 257527 ~ 260223 (-) True fgf10b
XM_034299336.1 mRNA downstream 163763 238817 ~ 254544 (-) True mybbp1a
XM_034299098.1 mRNA downstream 181035 230732 ~ 237272 (-) False LOC117595925
XM_034299076.1 mRNA upstream 1893 440336 ~ 469953 (-) True atp8b5a
XM_034299077.1 mRNA upstream 1893 440336 ~ 456090 (-) False atp8b5a
XM_034299346.1 mRNA upstream 37051 475494 ~ 516272 (-) True LOC113528156
XM_026917111.2 mRNA upstream 85364 523807 ~ 577436 (-) True LOC113528517
XM_034299169.1 mRNA upstream 214546 652989 ~ 658898 (-) False pgam5
TU411959 other downstream 50572 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 181035 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 181943 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 207665 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 425777 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 638290 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 719348 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 719348 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 918125 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile