RNA id: TU412047


Basic Information

Item Value
RNA id TU412047
length 452
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC117595934
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 830810 ~ 837338 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGGTTACTGAGGTCGAGACGTACACAGGAGCGCAGGTTTGGTCTGAATATCTCACTCCAAAGCCGAGATATGAGGCTCTGTTTCCAACAAACTCCAGAGTTTGATGTGAATAGTGATGGTCCTGAGACACACTGCACAGCACTGTATCTCCATCTGCATGGGTGACTCAGTGACCAGGtggtacgagtgtgtgtgtgtgtgtctcagtgtgatGATCAAGTTTCAAAGCTCAACTTGGATTTCTCAGATTATAAACACAGGTCTTTGTGTGTAGGTGTTGATGTGGAGGATAAACGTCTCTACAGAAGGCACCAGGagtctggagctgtgaggaccTGCAGAGGAGCTCAGCTCATCACTACAGGTCAGAGATCACCTTTTATATTCTTAGATCATtcatatagcacttttaacattagacacaaatccagatgtagattttgaTCCATA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412034 lncRNA downstream 433 830983 ~ 832930 (-) True G347758
XR_004577125.1 lncRNA downstream 3522 826664 ~ 829841 (-) True LOC117595935
TU412178 lncRNA downstream 66767 766065 ~ 766596 (-) True G347868
TU412173 lncRNA downstream 67995 763323 ~ 765368 (-) True G347866
TU412171 lncRNA downstream 76027 757033 ~ 757336 (-) True G347864
TU412274 lncRNA upstream 82705 917601 ~ 924667 (-) False LOC113527995
TU412216 lncRNA upstream 84488 919384 ~ 1389230 (-) False G347896
TU412222 lncRNA upstream 90593 925489 ~ 1359907 (-) False G347896
TU412225 lncRNA upstream 90593 925489 ~ 1467707 (-) True G347896
TU412228 lncRNA upstream 90593 925489 ~ 1701550 (-) False G347896
XM_034299169.1 mRNA downstream 174465 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA downstream 174465 652989 ~ 658898 (-) True pgam5
XM_026917111.2 mRNA downstream 255927 523807 ~ 577436 (-) True LOC113528517
XM_034299346.1 mRNA downstream 317091 475494 ~ 516272 (-) True LOC113528156
XM_034299077.1 mRNA downstream 377273 440336 ~ 456090 (-) False atp8b5a
XM_026916266.2 mRNA upstream 2665 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA upstream 2665 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA upstream 2665 837561 ~ 841054 (-) False LOC113528030
XM_026916212.2 mRNA upstream 14490 849386 ~ 851691 (-) True tal2
XM_034299228.1 mRNA upstream 21884 856780 ~ 924649 (-) False LOC113527995
TU411959 other downstream 465628 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 596091 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 596999 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 622721 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 29324 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 241837 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 322895 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 322895 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 521672 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile