RNA id: TU412100


Basic Information

Item Value
RNA id TU412100
length 374
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G347821
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 642986 ~ 643487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggaccctttagtgtgagtgtgtactgagtGCTGGACCCtttaatgtgagtgtgtatagactgctggaccctttagtgtgagtgtgtatagactcctggaccctttagtgtgagtgtgtatagactgctggaccctttagtgtgtgtgtgtactgattgctggaccctttagtgtgagtgtgtactgagtgctggaccctttagtgtgagtgtgtactgagtgctggaccctttagtgtgagtgtgtactgattgctggaccctttagtgtgagtgtgtactgattgctggaccctttagtgtgagtgtgtatagactgctggaccctttagtgtgagtgtgtacagactcctggaccctttagtgtgagtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412035 lncRNA downstream 4706 634759 ~ 638280 (-) True G347759
TU412023 lncRNA downstream 23424 527948 ~ 619562 (-) True G347753
TU412026 lncRNA downstream 23424 564727 ~ 619562 (-) False G347753
TU411984 lncRNA downstream 176731 418354 ~ 466255 (-) False rusc2
TU411979 lncRNA downstream 245536 395367 ~ 397450 (-) True G347723
TU412114 lncRNA upstream 29590 673077 ~ 676630 (-) True G347833
TU412129 lncRNA upstream 65067 708554 ~ 715445 (-) False G347847
TU412131 lncRNA upstream 65067 708554 ~ 715445 (-) True G347847
TU412134 lncRNA upstream 65067 708554 ~ 715445 (-) False G347847
TU412135 lncRNA upstream 65067 708554 ~ 715445 (-) False G347847
XM_026917111.2 mRNA downstream 65550 523807 ~ 577436 (-) True LOC113528517
XM_034299346.1 mRNA downstream 126714 475494 ~ 516272 (-) True LOC113528156
XM_034299076.1 mRNA downstream 173033 440336 ~ 469953 (-) True atp8b5a
XM_034299077.1 mRNA downstream 186896 440336 ~ 456090 (-) False atp8b5a
XM_034299345.1 mRNA downstream 204543 418307 ~ 438443 (-) True rusc2
XM_034299169.1 mRNA upstream 9502 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA upstream 9502 652989 ~ 658898 (-) True pgam5
XM_026916266.2 mRNA upstream 194074 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA upstream 194074 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA upstream 194074 837561 ~ 841054 (-) False LOC113528030
TU411959 other downstream 275251 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 405714 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 406622 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 432344 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 220733 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 433246 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 514304 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 514304 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 713081 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile