RNA id: TU412114


Basic Information

Item Value
RNA id TU412114
length 1852
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G347833
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 673077 ~ 676630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGAGTTTAagagtttacttttttaaaatatagtttgGTGGAAAATGAAGTCACAACATTCACTTTTCCTCAGATGTAACCGCTCAGCAAGGGCAGGTTTGGTGTGTGAAGTTCGTTCATTTTCTCGCTGGAGCTACCAGGCTAAAGTCTCCTTCTCCCAAACGtttaaatacacatacattGTAAAGCTAATtagtttaaataaagtatttaatgAAATAGCAGTGAGAGTCCATTTTAAAAAGAGGGTGGAGCCTAGAATGACCCTGAAAGTCGGGATCACTTTGGCGCTGGAGTGGTACATTCTGCCCTTTAGTTAGAGGAACATCATTAAAGGTAGTGGTACAATTTGACCTTCAGAGTCCTTGATGTACTTTTAGGTCACTCATGGTCTTTTTCTTCATCTCCATCTGTCCACTTTCAGTGATCCCGTGCCCACtgtagcatcagattcctgttcctggctgacaggagaggaacctgatgtggtctcctgctgttgtagctcatccgcctTAAGGTTCgtcgttctgagatgcttttctgctcagcacagttgtaaagagtggttatttcccgtcagctcaaactagtctggCCATACTCTTCATCAACAATGCGTTTCCGCCAACAGAACTGATGTTCAcgtgatgttttttgtttttcgtaccTTTCtgtttagagactgttgtgtgtgaaaatcccaggagctcagcagtttctgaaatactcaaactcacaccaacagccatgccacggtcacagtcactgagatcgCCGAGATCACGGAGAtcttccccccattctgatgttcgatgtgaacattaacggAAGCTCTTgtcctgcatctgcatgatgttaTACACTGCACAGCTGCCTGGTGATCGGCTGATTGGACAACTGCATGAACcagcaggtgtgcaggtgttcctgcTTTTCTAAtgtggctgatcagtgtatataaataactagtttaaagcattttgtgttttgtgttgtttgtcaGCCCAAATCTCCAGCACTACgactctgtcctttggctcagtttagcagctcgcaaaacatctacaaaaaacccacaacgCGCgacatgtttgattcacttcctgcagtgagtCAATTCAGAGTCGAAAGTAGAACGAGACCACGTCGCTCAGATGCTCTCAGACCTGAGTATCTTGACCGAGCAGTCGTGCGATGATGAAGCGACGAGCGCAGGCGAGCCGATGCTCGGGGGGAGGAACACGCAGCACGCCGTCGTCTGAACATGTCCTCTGTATTCCACCACCTTACAGCCTGGCTGTCTGAGGTcccacagctacacacacacacacacacacacacacacacacacacacacacacacttacagagtGATcggatacacacacaggcatcaGCAGTCCCAGCTGTTCAGTAGTAATCAGATAGATACACAagcatgtaacacacacacctcacacacacacacacacacacatacatacacacacactgaccgtGGCCTCACAGCCGTGACCCCCGAAGCCGTTGCTGCAGGACAGTAGGTGGTAGCGGTTCACACTCACGTCACAGTGAGTCTGGATGTACTGCTTAGCTGGAAACGTGTTCGTCACCTGCCATGTCCGACTGTcccacactctgtaacacacacacacacacacacacagacacacacacacacacacacacacagacacacctatCCTACATTACACAGGAAATCTACAACGTTCATTTCCTGCCACTGAATCTGATTATTATGTGATTATGTGTCATGAACATctgataaaattaaaatgaaaatgacttttttttgacTTCACATTTGGTTTGTGATTAAACTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412100 lncRNA downstream 29590 642986 ~ 643487 (-) True G347821
TU412035 lncRNA downstream 34797 634759 ~ 638280 (-) True G347759
TU412023 lncRNA downstream 53515 527948 ~ 619562 (-) True G347753
TU412026 lncRNA downstream 53515 564727 ~ 619562 (-) False G347753
TU411984 lncRNA downstream 206822 418354 ~ 466255 (-) False rusc2
TU412129 lncRNA upstream 31924 708554 ~ 715445 (-) False G347847
TU412131 lncRNA upstream 31924 708554 ~ 715445 (-) True G347847
TU412134 lncRNA upstream 31924 708554 ~ 715445 (-) False G347847
TU412135 lncRNA upstream 31924 708554 ~ 715445 (-) False G347847
TU412132 lncRNA upstream 32304 708934 ~ 715445 (-) False G347847
XM_034299169.1 mRNA downstream 14179 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA downstream 14179 652989 ~ 658898 (-) True pgam5
XM_026917111.2 mRNA downstream 95641 523807 ~ 577436 (-) True LOC113528517
XM_034299346.1 mRNA downstream 156805 475494 ~ 516272 (-) True LOC113528156
XM_034299076.1 mRNA downstream 203124 440336 ~ 469953 (-) True atp8b5a
XM_026916266.2 mRNA upstream 160931 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA upstream 160931 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA upstream 160931 837561 ~ 841054 (-) False LOC113528030
XM_026916212.2 mRNA upstream 172756 849386 ~ 851691 (-) True tal2
XM_034299228.1 mRNA upstream 180150 856780 ~ 924649 (-) False LOC113527995
TU411959 other downstream 305342 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 435805 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 436713 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 462435 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 187590 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 400103 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 481161 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 481161 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 679938 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile