RNA id: TU412131


Basic Information

Item Value
RNA id TU412131
length 1269
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G347847
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 708554 ~ 715445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGATATGCAAACTtgacatgtttattttacacagaaaaataaatacaacattaaatattcattaaataaatagcacAGAATAAATAACTACATGAGCATGTAACAGCATTTCTTCATCAAACTCAAACAACTGGTTCAAATAGTTCAAGTGTTGCTCGGAGTGACagtgatcatcatcatcatcatcatcatcctcgtCATCACACAGCTTTGTAGTGCTCTCCTACACAGTATtctagatttaaaataaatatataaagtaacaCTTCAAGTAAACTTCAAGTTCAAGTTTAGtccattaaaatgtgtgtgtcagttcctGTCTTGCATCTCTGCACAGGCAAAGTGCTGATTTAACCTCTTCGTTTTACTCAGTAATTCAGTTCTTTAGTGAGGAATTACTTCATGAACAAGGCAGATGTTAATGCAGATGTGCACAGAGCAGTCCAGCTGAGGTGAACACCTTCTGTCTGTGTTCCTCGTGGAAGCCTGGTGTCTCTGTGTCTTCAGCTcggtctctctgtctctgtttgtccCTGAGGGCAGTGAGAGCCTCCATCAGTGCtcagtggatggatggatggatggatgttcaCTGCTCGCCTCCCAGCGTGTGGTAAACAGCGGGATACAGGAGCGCCACCACGTAGGGGTTGTTCCTCTGCTGCTGGCGGTGCTGACGGTGTTCCTGCACTTCTGTCTCCTCCATCTCGCAGGTCGTGTTCATCCACGGCCCCGCGTCTGTGGAGCAGCTGGTCATGCGCCTGGCGGTCTCCTCGGCCGAGCGGAAGTGCAGGAAGAGCGGCGAGGACGCAGACGCACCATCGCCCGGCAGCTCACCGGCGAGAGCGTCTGACAGCGCGGCCGCTTCCGTGATGTCGTGCTCGTCGTCGCGCTCGGTGTAAATCTGCGCCAGCAGCACCAGGCACAGCGCCAGCAGCCAGCGCTTGGCGGGGCTCTTCTCGGCCGGCGGCAGGTATTTGCGCACTTTGGCCGGGTACATGACCCGCGTCACTCTgcgccgctgctgctgctgctgctgctgcctcaGAGGGCTGAAGTGCTGATCCGGGAGCCGGTCGAAGGTGAACACTTCGGGCTCGGTGCTGCGCGCCATCGGTCTGTACGCGCTGTGAGTCGGGTAGGTGAAGCTCATGGTGGTGGATCTGCTGGTGTACATTGTGTCGTGATCAGTGTGTGTCGCGCTGTCCGCTCCGCGTCTCTGAGCGCTGATGCTCGGTGTGTCGGGCTCGAGCTGCGCGCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412114 lncRNA downstream 31924 673077 ~ 676630 (-) True G347833
TU412100 lncRNA downstream 65067 642986 ~ 643487 (-) True G347821
TU412035 lncRNA downstream 70274 634759 ~ 638280 (-) True G347759
TU412023 lncRNA downstream 88992 527948 ~ 619562 (-) True G347753
TU412154 lncRNA upstream 27372 742817 ~ 746215 (-) False G347859
TU412155 lncRNA upstream 27372 742817 ~ 746215 (-) False G347859
TU412156 lncRNA upstream 27372 742817 ~ 746215 (-) False G347859
TU412157 lncRNA upstream 27372 742817 ~ 746215 (-) False G347859
TU412158 lncRNA upstream 27372 742817 ~ 746215 (-) False G347859
XM_034299169.1 mRNA downstream 49656 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA downstream 49656 652989 ~ 658898 (-) True pgam5
XM_026917111.2 mRNA downstream 131118 523807 ~ 577436 (-) True LOC113528517
XM_034299346.1 mRNA downstream 192282 475494 ~ 516272 (-) True LOC113528156
XM_034299077.1 mRNA downstream 252464 440336 ~ 456090 (-) False atp8b5a
XM_026916266.2 mRNA upstream 122116 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA upstream 122116 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA upstream 122116 837561 ~ 841054 (-) False LOC113528030
XM_026916212.2 mRNA upstream 133941 849386 ~ 851691 (-) True tal2
XM_034299228.1 mRNA upstream 141335 856780 ~ 924649 (-) False LOC113527995
TU411959 other downstream 340819 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 471282 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 472190 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 497912 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 148775 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 361288 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 442346 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 442346 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 641123 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile