RNA id: TU412225


Basic Information

Item Value
RNA id TU412225
length 4249
lncRNA type read_through
GC content 0.40
exon number 9
gene id G347896
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 919384 ~ 1701550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcattcagatTGTTACACTGACAGAACAGATGCATTGTGGGAGAGATTTGGGTCGTACAGATGTGAAAACGTGTTTACTGGAttgttatttgctttaaatcgagttaaataataaataatggaatCAGTGCCGTGTCATTTAGttgatttgtgttttctctgagtGCTGATCATCCAGCATGAGCTCCTGCTTCTGCTGTGTTCACTCCTGTTCTTTTCCACTTTAGTCCAATCTGTTCAACACCAATCACATCTGAAGCCCCAGTTTCTGTCTGATACGAAGCACAAATCAGCTCCACAAACAGCTACTGAGGAAAATCTCACTGGAGTAAAAGCTAAAAGATGTAAATCAAACCTCTCATGTACTGACATTATGATCTGAATTCAATTCTACAGTAAATCATGTTGTAAATGTACAGAGTAAAGAAGCTCagaatcactgtgtgtgtgtgtgtgtgtgtgtgtatcaggaagtgtgtgtgaggttgtactgaatataaaataaggCGAGTGTAAAGCTGCGTTCATCATCCAGACGTGTTGCACAGAACAGGTTTAaatctgcttgtgtgtgtttcattgctGTGAGCGACGGAGATCCCAGAGGAAGAATGGAAAGTGACTCGCTATGACGCCATCACTGACCATCTTTACTCCAAAACCTGGTTTCCCCCAAAAGCAGGATCCTACAGCGCTGAGCTCAGTGGAACAGAACAGCACAgcgacaaacacacacacacacacacacacacatcaaacccAATCACACAGAAAACTACGAGAATTTACACAGAGCAAAAAATTAAAACCCTAACAATCCCTAATAATCCCATtttacagcaataacaacagACTCACAATAAAAAGCTCCTCCatccaaacaccaagaaaatcATACACCAAGATTACCCACtggaataatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgtgtgcgcgctcctcatctccctctcctcctctctccCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTGGtctggaagaagaagaGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCCGTGAGCGAGCGCCGAATCCTGAATCCTGGTTTGCTCTCAGAGCCTCTGGTCTCTTCAACTTTGGAGGCAGAAGCTGGAGATACTGTCACTATTTGGTGCCAACATAACCTGAATTATCGAGGTTCCATCTTCTGGTTTAAACACACGAGTGATTCAGTTCCACGTCTTCTTGGGTGCAAACAGATTTTTACATCAGCTGCATCATATCCGTGTTCCTACTTTACTGAAACTGAGCGCATGGTGATGGCTGTTCAGGGCAGATTCACGTCTCTCACAATCACTGCAGTAAATGTCTCTGATACAGGACTCTATTACTGCAGCTCCATGCAAATGGACCGAATTAACTTTAGCAACTCGACCTCTTTCCATGTGAAAGACAGAAACAAAATACTTTCTGAGAACTTGGACAGAGCGACagGTTCAGTCTCTTCTGCTGTGTTCTTCATGCTGACTGTGGTGTTTGGTGTAGTGATTGTGATTCTTCTCGCTGTCCTGATCTTCACcatgctgaagaaaaaaacatacagaggtgTTGAGGCAGAAGATAATTAGGTAACTCTGAGACTCAAAACCAAAAACGAGTAGATACAGTTTCctccagatttatttattaactctgATTTAATTTTTGAACAAAAATAATCTCAGTCTGTAACTTGTTTCCTGAGCtggtggagattttttttttttttttttagcctcacattaaaaatcttttatatatgtttttttttcactcatttcttaagggtgccaataattttgtgtACAGTTTAGTGcagtatttaaatattgtatatgaATGTAAATTACAGCAACGGAACATTTATGGTGTTGGGTTTTACAGTTGTTCCTTCATTATgacaaaatgatcaaataatgaattttaagATATTAATCATGAAAAAAGTCCAAATGAAAAACCTACATGTGATGTACTGtttacactaaatggccaaaagtatgtggacacctgaccatcacacctatatgtgcttgctgaacatcccatttcacattcattcccctctgtgtttgctgttataatgagctccactcttctgggaagctttccactagatgttggagcgtggctgtggggatttgtgttcattagtgagatcaggcgctgatgttggtgaggaggtctggggtgtagtcactgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctcttaTTCTTATTCAGCTTGTAATtcagtgtaataaaatattcaggtgcaaattgtattttaagaaaataagaaaataacagaTTTGTAAAGACTCTGGTAAAGAGTAAAAATGATCCTTCTTTAAGTCTAGACTCACTGTATAGCTGAAGATTATGCTATGTGTCAAATTTTGTCTGAAGTATCATTTGCTAAAAAGGATTCTTTCAGTTGTGAAGTCTGAAGAAACATTTCCTccgaggaaaacacacacacacacacacacacacacacacacactgtgattcTGATTTACTCAGGCTTTAgactttatttgtgttttaaatcattttgagCTAAAATTGTAAAAGTGTGATTATTGTAGTGAATTTTCCCCCAGAGCTGCAGTTTAACATCATTatattccagtgtgtgtgtttcaggagtgTGTATGAGCTTCTTTACTCTGTACATTTACAACATGATTTACTGTAGAATTGAATTCAGATCATAAGGTCAGTACATGAGAGGTTTGATTTACATCTTTTAGCTTTTAATCCAGTGAGATTTTCCTCAGTAGCTGTTTGTGGAGCTGATTTGTGCTTCGTATCGGACAGAAACTGGGGCTTCAGATGTGATTGGTGTTGAACAGATTGGACTAAAGTGGAAAAGAACAGGAGTGAACACAGCAGAAGCAGGAGCTCATGCTGGATGATCAGCactcagagaaaacacaaatcaaCTAAATGACACGGCACTGAttccattatttaattatttaactcgatttaaagcaaataacaaTCCATTAAACACGTTTTCACATCTGTATGACCCAAATCTCCCACAATGCATCTGTTCTGTCAGTGTAACAatctgaatgaataataaagtgtattttcttcattctgtgctctgagttttattttataactgtgTTCTTTTAAAGCACATGATCTCAGGATCACTTGTACACTTACTGTCAtgtgcttcacacacacacacacacacacacacacacacatctctcttgAGTTTAACATGACAATGAGAGGTAGATTTCATCTCAGAACAGTCTTGAGAGACATTTTCCAATTTaagcagtttattattttaatcttaattCAAAGCACATTTGAGTTTTCTGCTTTCAGCACTGACCAAAAATGTTCACAATCTGGAGTTTTAGAATGTCTAGAATTTACAGTttcaaatgtgtaaaatatggaAACATGAGCCAGATGAATTTTGCCCCTCAGGCTGATCTTTAAGgcactgtatgtttttattagtCTCAGGACAATCAGTAATTATACCACATcatacactgtgtgtttccaGATCTTTcaccacaccaacacacactcaacactgacATGTCAGAGTTATTAGCTATAATAGCTATTAGCTATTAGCAactgtcttcacttcctgcttgttcATGGGATGTCTTGCCTTCAGGTTTCCTTCAGCAGCTGAAATGCATTTTGGAAATAAATCactgtccatctgcactgtcaAGCTCCATCCAGTCCTTTTGAAGCAtctggctgaatgtgagcagataaAATAGACAGCAGATGAAACTTCAGATTTCGTCCTGCTGCTTTTATAAGCAGTCCTTTCATCAGTACATACAAAGGACCCTGTTCCACTGGCAGACGTACACACCCAGGCCATAACATGAGGTTTTctgcttcagatcatgagcagttccttcccttctccacaCTCTTCTCCTCCCATCATTCTGCATCAGTCtgtgacatgaaaatgaataaggaatatttctgaaatgtctGTAAAAAGCCTCTAAAGCAGTGCAACAGGCATGTGGGACAAATTATTAATCAGTGATCTCATTCAGATGTGTGCTGCAGTTGCTCGGTGAGTTTCATTTTACTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412274 lncRNA downstream 822 917601 ~ 924667 (-) False LOC113527995
XR_004577124.1 lncRNA downstream 88151 830810 ~ 837338 (-) False LOC117595934
TU412047 lncRNA downstream 90593 833363 ~ 834896 (-) True LOC117595934
TU412034 lncRNA downstream 92559 830983 ~ 832930 (-) True G347758
XR_004577125.1 lncRNA downstream 95648 826664 ~ 829841 (-) True LOC117595935
TU412270 lncRNA upstream 28703 1496410 ~ 1496871 (-) True G347916
TU412386 lncRNA upstream 60018 1527725 ~ 1530278 (-) False LOC113542373
XR_004577149.1 lncRNA upstream 115013 1582720 ~ 1605702 (-) True LOC117595968
TU412255 lncRNA upstream 164484 1632191 ~ 1638134 (-) True G347901
TU412446 lncRNA upstream 178971 1646678 ~ 1710908 (-) False LOC117595719
XM_034299228.1 mRNA downstream 840 856780 ~ 924649 (-) False LOC113527995
XM_034299229.1 mRNA downstream 866 856780 ~ 924623 (-) False LOC113527995
XM_034299230.1 mRNA downstream 866 856780 ~ 924623 (-) False LOC113527995
XM_034299226.1 mRNA downstream 866 856780 ~ 924623 (-) False LOC113527995
XM_034299227.1 mRNA downstream 866 856780 ~ 924623 (-) True LOC113527995
XM_026939866.2 mRNA upstream 37932 1505639 ~ 1530394 (-) False LOC113542373
XM_026939867.2 mRNA upstream 37932 1505639 ~ 1530394 (-) True LOC113542373
XM_034299297.1 mRNA upstream 37932 1505639 ~ 1512287 (-) False LOC113542373
XM_034299296.1 mRNA upstream 37933 1505640 ~ 1512342 (-) False LOC113542373
XM_026939849.2 mRNA upstream 67888 1535595 ~ 1558524 (-) True slc6a4b
XR_004577138.1 other downstream 866 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 557754 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 688217 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 689125 230525 ~ 236364 (-) True LOC117595925
TU411850 other downstream 714847 206493 ~ 210642 (-) False LOC113528266
XR_003404300.2 other upstream 39908 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 59885 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 61071 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 130763 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412500 other upstream 360191 1827898 ~ 1828645 (-) True G348096

Expression Profile